Using mod functions from htslib #323
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… made to gather objects in each of the subdirs
…ts.txt src/analysis/CMakeLists.txt src/amrfinder/CMakeLists.txt: adding uniform structure to make a librarry for each subdir's objects
…odifications in nanopore bams
…avoid leading zeros in the major.minor.patch
…c CMakeLists.txt because the version matters and otherwise it would get confusing
…c CMakeLists.txt because the version matters and otherwise it would get confusing
…idering only non-skipped reads
…ctly when particular sites had no modification information; this really impacted the CpG-only data
…t modification and m is the 2nd for an initial set of reads
…wice for each chromosome
…ls and not radmeth
…use it outside radmeth
…/dnmtools_build_ubuntu.yml: working on deps
…re.ac and Makefile.am: adding condition to build for nanopore if htslib version is recent enough to support mods and user requests it
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They seem to do the same as the ones I coded