Update release workflows to link with libdeflate by andrewdavidsmith · Pull Request #276 · smithlabcode/dnmtools

.github/workflows/dnmtools_release_linux.yml: cloning and building libdeflate in the release workflow so htslib can link against it

andrewdavidsmith

committed

configure.ac: adding commented out line that turns on libdeflate for htslib when uncommented

andrewdavidsmith

committed

.github/workflows/dnmtools_release_linux.yml: adding line that turns on libdeflate in configure.ac before autoreconf in linux release workflow

andrewdavidsmith

committed

Update dnmtools_release_linux.yml

andrewdavidsmith

authored

src/analysis/nanopore.cpp: removing some using statements

andrewdavidsmith

committed

.github/workflows/dnmtools_release_linux.yml: adding forgotten modification to configure.ac in submodule abismal in release build workflow

andrewdavidsmith

committed

configure.ac: adding option to turn on libdeflate in the configure script

andrewdavidsmith

committed

.github/workflows/dnmtools_release_macos.yml and .github/workflows/dnmtools_release_linux.yml: using --with-libdeflate to turn on libdeflate for release workflow builds

andrewdavidsmith

committed

src/abismal: updating submodule

andrewdavidsmith

committed

.github/workflows/dnmtools_release_macos.yml: adding forgotten install for libdeflate

andrewdavidsmith

committed

.github/workflows/dnmtools_release_macos.yml: adding sudo to install libdeflate in /opt/dnmtools

andrewdavidsmith

committed

.github/workflows/dnmtools_release_macos.yml: fixing LDADD to LDFLAGS and adding CPPFLAGS for building htslib with libdeflate

andrewdavidsmith

committed

.github/workflows/dnmtools_release_macos.yml: not install cmake with brew because it's already there

andrewdavidsmith

committed

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Update release workflows to link with libdeflate#276

Update release workflows to link with libdeflate#276
andrewdavidsmith merged 13 commits intomasterfrom
linking-with-libdeflate

Commits on Jun 17, 2025

.github/workflows/dnmtools_release_linux.yml: cloning and building libdeflate in the release workflow so htslib can link against it

configure.ac: adding commented out line that turns on libdeflate for htslib when uncommented

.github/workflows/dnmtools_release_linux.yml: adding line that turns on libdeflate in configure.ac before autoreconf in linux release workflow

Update dnmtools_release_linux.yml

src/analysis/nanopore.cpp: removing some using statements

.github/workflows/dnmtools_release_linux.yml: adding forgotten modification to configure.ac in submodule abismal in release build workflow

configure.ac: adding option to turn on libdeflate in the configure script

.github/workflows/dnmtools_release_macos.yml and .github/workflows/dnmtools_release_linux.yml: using --with-libdeflate to turn on libdeflate for release workflow builds

src/abismal: updating submodule

.github/workflows/dnmtools_release_macos.yml: adding forgotten install for libdeflate

.github/workflows/dnmtools_release_macos.yml: adding sudo to install libdeflate in /opt/dnmtools

.github/workflows/dnmtools_release_macos.yml: fixing LDADD to LDFLAGS and adding CPPFLAGS for building htslib with libdeflate

.github/workflows/dnmtools_release_macos.yml: not install cmake with brew because it's already there

Update release workflows to link with libdeflate#276andrewdavidsmith merged 13 commits intomastersmithlabcode/dnmtools:masterfrom linking-with-libdeflatesmithlabcode/dnmtools:linking-with-libdeflateCopy head branch name to clipboard

Commits

Commits on Jun 17, 2025

Update release workflows to link with libdeflate#276
andrewdavidsmith merged 13 commits intomasterfrom
linking-with-libdeflate