Search results

main.java.pg.S3Interface[download:65] - Error when retrieving MS/MS index file!

Status: Open.

#109 In bzhanglab/PepQuery;

· anuC opened on Nov 6, 2025

Questions about using HBV PDC000198 dataset

Status: Open.

#108 In bzhanglab/PepQuery;

· 2390735351-byte opened on Nov 4, 2025

spectrum matched to a wrong peptide

Status: Open.

#105 In bzhanglab/PepQuery;

· treko90 opened on Oct 14, 2025

No output of peptide with low score in validation model

Status: Open.

#104 In bzhanglab/PepQuery;

· YongchaoDou opened on Jul 24, 2025

Comparing Wild-Type and Mutant Protein Expression

Status: Open.

#102 In bzhanglab/PepQuery;

· anuC opened on Jul 18, 2025

ms files in dataset Deep_29_healthy_human_tissues_PXD010154

Status: Open.

#99 In bzhanglab/PepQuery;

· sophiachen1 opened on Jun 1, 2025

MS/MS index file retrieving error through AWS

Status: Open.

#98 In bzhanglab/PepQuery;

· qqwang-berkeley opened on May 29, 2025

Meaning of n_db and n_ptm values

Status: Open.

#93 In bzhanglab/PepQuery;

· katherine-d21 opened on Apr 17, 2025

Testing different intensity thresholds

Status: Open.

#92 In bzhanglab/PepQuery;

· Francis-B opened on Apr 9, 2025

no matched spectrum on ab sciex

help wanted

V2

Status: Open.

#91 In bzhanglab/PepQuery;

· treko90 opened on Apr 8, 2025

Cannot open the link https://github.com/wenbostar/pepquery2_manuscript

Status: Open.

#90 In bzhanglab/PepQuery;

· xiaodfeng opened on Apr 1, 2025

Does the current standalone version work with public datasets in PRIDE, MassIVE, jPOSTrepo and iProX, or Universal Spectrum Identifiers (USIs) from ProteomeXchange?

bug

V2

Status: Open.

#89 In bzhanglab/PepQuery;

· zxseason opened on Mar 18, 2025