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@ProteinDesignLab

Protein Design Lab

Possu Huang Lab, Stanford Bioengineering

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  1. protpardelle protpardelle Public

    Diffusion-based all-atom protein generative model.

    Python 228 19

  2. protein-design-tutorials protein-design-tutorials Public

    Tutorials, cheat sheets, and other resources for computational methods for protein design.

    Jupyter Notebook 128 28

  3. protein_seq_des protein_seq_des Public

    Code for our paper "Protein sequence design with a learned potential"

    Python 81 24

  4. caliby caliby Public

    Potts model-based protein sequence design

    Python 78 12

  5. protpardelle-1c protpardelle-1c Public

    Updated Protpardelle models with more robust motif scaffolding and multichain support

    Python 58 12

  6. IgVAE IgVAE Public

    Forked from egurapha/IgVAE

    A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.

    Python 33 5

Repositories

Showing 10 of 13 repositories
  • 3DRNA Public
    ProteinDesignLab/3DRNA’s past year of commit activity
    Python 0 0 0 0 Updated Dec 19, 2025
  • caliby Public

    Potts model-based protein sequence design

    ProteinDesignLab/caliby’s past year of commit activity
    Python 78 Apache-2.0 12 0 0 Updated Dec 19, 2025
  • protpardelle-1c Public

    Updated Protpardelle models with more robust motif scaffolding and multichain support

    ProteinDesignLab/protpardelle-1c’s past year of commit activity
    Python 58 MIT 12 0 0 Updated Dec 15, 2025
  • protpardelle Public

    Diffusion-based all-atom protein generative model.

    ProteinDesignLab/protpardelle’s past year of commit activity
    Python 228 MIT 19 4 0 Updated Aug 27, 2025
  • protein_shapes Public

    Metrics to evaluate distributional coverage of generative models of protein structures.

    ProteinDesignLab/protein_shapes’s past year of commit activity
    Python 18 MIT 4 1 1 Updated Aug 13, 2025
  • protein_seq_des Public

    Code for our paper "Protein sequence design with a learned potential"

    ProteinDesignLab/protein_seq_des’s past year of commit activity
    Python 81 BSD-3-Clause 24 0 0 Updated Sep 8, 2023
  • protein-design-tutorials Public

    Tutorials, cheat sheets, and other resources for computational methods for protein design.

    ProteinDesignLab/protein-design-tutorials’s past year of commit activity
    Jupyter Notebook 128 28 0 0 Updated Aug 15, 2023
  • IgVAE Public Forked from egurapha/IgVAE

    A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.

    ProteinDesignLab/IgVAE’s past year of commit activity
    Python 33 BSD-3-Clause 10 0 0 Updated Jul 25, 2022
  • IgFold Public Forked from Graylab/IgFold

    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    ProteinDesignLab/IgFold’s past year of commit activity
    Python 0 70 0 0 Updated May 4, 2022
  • ColabFold Public Forked from sokrypton/ColabFold

    Making Protein folding accessible to all via Google Colab!

    ProteinDesignLab/ColabFold’s past year of commit activity
    Jupyter Notebook 0 MIT 700 0 0 Updated Aug 7, 2021

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