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Probabilistic Models in Biology

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  1. scLVM scLVM Public

    scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources…

    HTML 108 46

  2. peer peer Public

    Forked from mz2/peer

    A factor analysis package

    C++ 104 40

  3. limix-backup limix-backup Public

    C++ 45 11

  4. pygp pygp Public

    A Gaussian process toolbox in python

    Python 42 9

  5. deeprvat deeprvat Public

    Python 41 8

  6. deepcpg deepcpg Public

    Forked from cangermueller/deepcpg

    Deep neural networks for predicting CpG methylation

    Python 37 13

Repositories

Showing 10 of 56 repositories
  • interp-extrap-perturb Public

    https://interp-extrap-perturb.readthedocs.io

    PMBio/interp-extrap-perturb’s past year of commit activity
    Jinja 3 MIT 2 4 0 Updated Jan 13, 2026
  • Health-Privacy-Challenge Public

    The starter kit for the CAMDA 2026 Health Privacy Challenge.

    PMBio/Health-Privacy-Challenge’s past year of commit activity
    Python 6 GPL-3.0 8 0 1 Updated Jan 6, 2026
  • spatialdata-workshops Public
    PMBio/spatialdata-workshops’s past year of commit activity
    Jupyter Notebook 13 BSD-3-Clause 6 5 1 Updated Dec 20, 2025
  • polygenic_germline_risk Public
    PMBio/polygenic_germline_risk’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 24, 2025
  • GBM_analysis Public

    Notebooks and scripts used to analyse GBM multi-ome atlas

    PMBio/GBM_analysis’s past year of commit activity
    Jupyter Notebook 3 2 0 0 Updated Aug 27, 2025
  • deeprvat Public
    PMBio/deeprvat’s past year of commit activity
    Python 41 8 2 2 Updated Jun 16, 2025
  • bicycle Public

    Bicycle: Intervention-Based Causal Discovery with Cycles

    PMBio/bicycle’s past year of commit activity
    Jupyter Notebook 36 7 1 0 Updated Jun 3, 2025
  • scDoRI Public
    PMBio/scDoRI’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Apr 14, 2025
  • SpatialDE Public Forked from Teichlab/SpatialDE

    Test genes for Spatial Variation

    PMBio/SpatialDE’s past year of commit activity
    Python 15 MIT 59 0 0 Updated Dec 20, 2024
  • MB_scSeq Public

    This repo contains scripts for the analysis of scDNA- and scSeq data from LFS medulloblastoma accompanying the manuscript "SINGLE CELL MULTI-OMICS ANALYSIS OF CHROMOTHRIPTIC MEDULLOBLASTOMA HIGHLIGHTS GENOMIC AND TRANSCRIPTOMIC CONSEQUENCES OF GENOME INSTABILITY".

    PMBio/MB_scSeq’s past year of commit activity
    Jupyter Notebook 4 2 0 0 Updated Oct 11, 2024
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