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Add riboWaltz test data #367

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65 changes: 65 additions & 0 deletions data/ribowaltz/test.ribowaltz.codon_usage.tsv
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Original file line number Diff line number Diff line change
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sample codon count norm_count scaled_count
test.ribowaltz GCC 0
test.ribowaltz GCG 0
test.ribowaltz GCU 0
test.ribowaltz GCA 0
test.ribowaltz AGA 0
test.ribowaltz CGG 0
test.ribowaltz AGG 0
test.ribowaltz CGA 0
test.ribowaltz CGC 0
test.ribowaltz CGU 0
test.ribowaltz AAC 0
test.ribowaltz AAU 0
test.ribowaltz GAC 0
test.ribowaltz GAU 0
test.ribowaltz UGC 0
test.ribowaltz UGU 0
test.ribowaltz CAA 0
test.ribowaltz CAG 0
test.ribowaltz GAG 0
test.ribowaltz GAA 0
test.ribowaltz GGC 0
test.ribowaltz GGU 0
test.ribowaltz GGA 0
test.ribowaltz GGG 0
test.ribowaltz CAC 0
test.ribowaltz CAU 0
test.ribowaltz AUA 0
test.ribowaltz AUC 0
test.ribowaltz AUU 0
test.ribowaltz CUG 0
test.ribowaltz CUA 0
test.ribowaltz UUA 0
test.ribowaltz CUU 0
test.ribowaltz UUG 0
test.ribowaltz CUC 0
test.ribowaltz AAA 0
test.ribowaltz AAG 0
test.ribowaltz AUG 0
test.ribowaltz UUC 0
test.ribowaltz UUU 0
test.ribowaltz CCG 0
test.ribowaltz CCC 0
test.ribowaltz CCU 0
test.ribowaltz CCA 0
test.ribowaltz AGC 0
test.ribowaltz UCG 0
test.ribowaltz UCU 0
test.ribowaltz UCA 0
test.ribowaltz UCC 0
test.ribowaltz AGU 0
test.ribowaltz UAG 0
test.ribowaltz UAA 0
test.ribowaltz UGA 0
test.ribowaltz ACA 0
test.ribowaltz ACC 0
test.ribowaltz ACG 0
test.ribowaltz ACU 0
test.ribowaltz UGG 0
test.ribowaltz UAU 0
test.ribowaltz UAC 0
test.ribowaltz GUA 0
test.ribowaltz GUG 0
test.ribowaltz GUU 0
test.ribowaltz GUC 0
10 changes: 10 additions & 0 deletions data/ribowaltz/test.ribowaltz.frames.tsv
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sample region frame count scaled_count
test.ribowaltz 5' UTR 0 5280 49.139134481154
test.ribowaltz 5' UTR 1 2926 27.2312703583062
test.ribowaltz 5' UTR 2 2539 23.6295951605398
test.ribowaltz CDS 0 55358 61.3086140828848
test.ribowaltz CDS 1 21343 23.6372294947616
test.ribowaltz CDS 2 13593 15.0541564223536
test.ribowaltz 3' UTR 0 4992 27.1643902704468
test.ribowaltz 3' UTR 1 6263 34.0806442836154
test.ribowaltz 3' UTR 2 7122 38.7549654459379
199 changes: 199 additions & 0 deletions data/ribowaltz/test.ribowaltz.frames_stratified.tsv
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sample length region frame count scaled_count
test.ribowaltz 20 5' UTR 0 1 2.63157894736842
test.ribowaltz 20 5' UTR 1 30 78.9473684210526
test.ribowaltz 20 5' UTR 2 7 18.4210526315789
test.ribowaltz 20 CDS 0 121 37.1165644171779
test.ribowaltz 20 CDS 1 108 33.1288343558282
test.ribowaltz 20 CDS 2 97 29.7546012269939
test.ribowaltz 20 3' UTR 0 22 28.9473684210526
test.ribowaltz 20 3' UTR 1 32 42.1052631578947
test.ribowaltz 20 3' UTR 2 22 28.9473684210526
test.ribowaltz 21 5' UTR 0 48 38.0952380952381
test.ribowaltz 21 5' UTR 1 78 61.9047619047619
test.ribowaltz 21 5' UTR 2 0 0
test.ribowaltz 21 CDS 0 200 12.1580547112462
test.ribowaltz 21 CDS 1 1029 62.5531914893617
test.ribowaltz 21 CDS 2 416 25.2887537993921
test.ribowaltz 21 3' UTR 0 119 33.7110481586402
test.ribowaltz 21 3' UTR 1 113 32.0113314447592
test.ribowaltz 21 3' UTR 2 121 34.2776203966006
test.ribowaltz 22 5' UTR 0 2382 82.7658095899931
test.ribowaltz 22 5' UTR 1 97 3.37039610840862
test.ribowaltz 22 5' UTR 2 399 13.8637943015983
test.ribowaltz 22 CDS 0 718 60.6418918918919
test.ribowaltz 22 CDS 1 251 21.1993243243243
test.ribowaltz 22 CDS 2 215 18.1587837837838
test.ribowaltz 22 3' UTR 0 65 31.1004784688995
test.ribowaltz 22 3' UTR 1 61 29.1866028708134
test.ribowaltz 22 3' UTR 2 83 39.7129186602871
test.ribowaltz 23 5' UTR 0 460 28.6783042394015
test.ribowaltz 23 5' UTR 1 429 26.7456359102244
test.ribowaltz 23 5' UTR 2 715 44.5760598503741
test.ribowaltz 23 CDS 0 366 25.9023354564756
test.ribowaltz 23 CDS 1 579 40.9766454352442
test.ribowaltz 23 CDS 2 468 33.1210191082803
test.ribowaltz 23 3' UTR 0 82 25.705329153605
test.ribowaltz 23 3' UTR 1 129 40.4388714733542
test.ribowaltz 23 3' UTR 2 108 33.8557993730408
test.ribowaltz 24 5' UTR 0 111 26.1176470588235
test.ribowaltz 24 5' UTR 1 254 59.7647058823529
test.ribowaltz 24 5' UTR 2 60 14.1176470588235
test.ribowaltz 24 CDS 0 1564 34.3358946212953
test.ribowaltz 24 CDS 1 799 17.5411635565313
test.ribowaltz 24 CDS 2 2192 48.1229418221734
test.ribowaltz 24 3' UTR 0 345 34.2601787487587
test.ribowaltz 24 3' UTR 1 409 40.6156901688183
test.ribowaltz 24 3' UTR 2 253 25.124131082423
test.ribowaltz 25 5' UTR 0 311 60.2713178294574
test.ribowaltz 25 5' UTR 1 74 14.3410852713178
test.ribowaltz 25 5' UTR 2 131 25.3875968992248
test.ribowaltz 25 CDS 0 5602 62.4804818202097
test.ribowaltz 25 CDS 1 1392 15.5253178674994
test.ribowaltz 25 CDS 2 1972 21.9942003122909
test.ribowaltz 25 3' UTR 0 468 27.3844353423054
test.ribowaltz 25 3' UTR 1 522 30.5441778818022
test.ribowaltz 25 3' UTR 2 719 42.0713867758923
test.ribowaltz 26 5' UTR 0 355 31.1676909569798
test.ribowaltz 26 5' UTR 1 531 46.6198419666374
test.ribowaltz 26 5' UTR 2 253 22.2124670763828
test.ribowaltz 26 CDS 0 3706 39.7596824375067
test.ribowaltz 26 CDS 1 3194 34.2667095805171
test.ribowaltz 26 CDS 2 2421 25.9736079819762
test.ribowaltz 26 3' UTR 0 642 34.5532831001076
test.ribowaltz 26 3' UTR 1 582 31.3240043057051
test.ribowaltz 26 3' UTR 2 634 34.1227125941873
test.ribowaltz 27 5' UTR 0 729 59.2201462225833
test.ribowaltz 27 5' UTR 1 270 21.9333874898457
test.ribowaltz 27 5' UTR 2 232 18.8464662875711
test.ribowaltz 27 CDS 0 11156 57.4903375418707
test.ribowaltz 27 CDS 1 6947 35.80005153311
test.ribowaltz 27 CDS 2 1302 6.70961092501933
test.ribowaltz 27 3' UTR 0 1051 26.5069356872636
test.ribowaltz 27 3' UTR 1 1242 31.3240857503153
test.ribowaltz 27 3' UTR 2 1672 42.1689785624212
test.ribowaltz 28 5' UTR 0 492 33.9310344827586
test.ribowaltz 28 5' UTR 1 608 41.9310344827586
test.ribowaltz 28 5' UTR 2 350 24.1379310344828
test.ribowaltz 28 CDS 0 25129 85.0677048070413
test.ribowaltz 28 CDS 1 2962 10.0270819228165
test.ribowaltz 28 CDS 2 1449 4.90521327014218
test.ribowaltz 28 3' UTR 0 900 19.1245218869528
test.ribowaltz 28 3' UTR 1 1634 34.721631959201
test.ribowaltz 28 3' UTR 2 2172 46.1538461538462
test.ribowaltz 29 5' UTR 0 303 29.5609756097561
test.ribowaltz 29 5' UTR 1 438 42.7317073170732
test.ribowaltz 29 5' UTR 2 284 27.7073170731707
test.ribowaltz 29 CDS 0 4863 61.9569371894509
test.ribowaltz 29 CDS 1 1303 16.6008408714486
test.ribowaltz 29 CDS 2 1683 21.4422219391005
test.ribowaltz 29 3' UTR 0 553 27.608587119321
test.ribowaltz 29 3' UTR 1 793 39.5906140788817
test.ribowaltz 29 3' UTR 2 657 32.8007988017973
test.ribowaltz 30 5' UTR 0 6 6.18556701030928
test.ribowaltz 30 5' UTR 1 57 58.7628865979382
test.ribowaltz 30 5' UTR 2 34 35.0515463917526
test.ribowaltz 30 CDS 0 1328 40.1572422134865
test.ribowaltz 30 CDS 1 1421 42.969458723919
test.ribowaltz 30 CDS 2 558 16.8732990625945
test.ribowaltz 30 3' UTR 0 352 36.1025641025641
test.ribowaltz 30 3' UTR 1 280 28.7179487179487
test.ribowaltz 30 3' UTR 2 343 35.1794871794872
test.ribowaltz 31 5' UTR 0 10 20.4081632653061
test.ribowaltz 31 5' UTR 1 24 48.9795918367347
test.ribowaltz 31 5' UTR 2 15 30.6122448979592
test.ribowaltz 31 CDS 0 357 23.8476953907816
test.ribowaltz 31 CDS 1 738 49.2985971943888
test.ribowaltz 31 CDS 2 402 26.8537074148297
test.ribowaltz 31 3' UTR 0 161 32.5252525252525
test.ribowaltz 31 3' UTR 1 212 42.8282828282828
test.ribowaltz 31 3' UTR 2 122 24.6464646464647
test.ribowaltz 32 5' UTR 0 31 62
test.ribowaltz 32 5' UTR 1 7 14
test.ribowaltz 32 5' UTR 2 12 24
test.ribowaltz 32 CDS 0 144 27.3764258555133
test.ribowaltz 32 CDS 1 223 42.3954372623574
test.ribowaltz 32 CDS 2 159 30.2281368821293
test.ribowaltz 32 3' UTR 0 103 36.013986013986
test.ribowaltz 32 3' UTR 1 106 37.0629370629371
test.ribowaltz 32 3' UTR 2 77 26.9230769230769
test.ribowaltz 33 5' UTR 0 8 17.7777777777778
test.ribowaltz 33 5' UTR 1 15 33.3333333333333
test.ribowaltz 33 5' UTR 2 22 48.8888888888889
test.ribowaltz 33 CDS 0 41 8.03921568627451
test.ribowaltz 33 CDS 1 311 60.9803921568628
test.ribowaltz 33 CDS 2 158 30.9803921568627
test.ribowaltz 33 3' UTR 0 88 33.0827067669173
test.ribowaltz 33 3' UTR 1 118 44.3609022556391
test.ribowaltz 33 3' UTR 2 60 22.5563909774436
test.ribowaltz 34 5' UTR 0 11 36.6666666666667
test.ribowaltz 34 5' UTR 1 6 20
test.ribowaltz 34 5' UTR 2 13 43.3333333333333
test.ribowaltz 34 CDS 0 13 13.5416666666667
test.ribowaltz 34 CDS 1 22 22.9166666666667
test.ribowaltz 34 CDS 2 61 63.5416666666667
test.ribowaltz 34 3' UTR 0 26 25.2427184466019
test.ribowaltz 34 3' UTR 1 13 12.621359223301
test.ribowaltz 34 3' UTR 2 64 62.1359223300971
test.ribowaltz 35 5' UTR 0 1 50
test.ribowaltz 35 5' UTR 1 0 0
test.ribowaltz 35 5' UTR 2 1 50
test.ribowaltz 35 CDS 0 27 24.5454545454546
test.ribowaltz 35 CDS 1 57 51.8181818181818
test.ribowaltz 35 CDS 2 26 23.6363636363636
test.ribowaltz 35 3' UTR 0 4 26.6666666666667
test.ribowaltz 35 3' UTR 1 11 73.3333333333333
test.ribowaltz 35 3' UTR 2 0 0
test.ribowaltz 36 5' UTR 0 21 52.5
test.ribowaltz 36 5' UTR 1 8 20
test.ribowaltz 36 5' UTR 2 11 27.5
test.ribowaltz 36 CDS 0 23 54.7619047619048
test.ribowaltz 36 CDS 1 5 11.9047619047619
test.ribowaltz 36 CDS 2 14 33.3333333333333
test.ribowaltz 36 3' UTR 0 7 31.8181818181818
test.ribowaltz 36 3' UTR 1 2 9.09090909090909
test.ribowaltz 36 3' UTR 2 13 59.0909090909091
test.ribowaltz 37 5' UTR 0 0 0
test.ribowaltz 37 5' UTR 1 0 0
test.ribowaltz 37 5' UTR 2 0 0
test.ribowaltz 37 CDS 0 0 0
test.ribowaltz 37 CDS 1 2 100
test.ribowaltz 37 CDS 2 0 0
test.ribowaltz 37 3' UTR 0 4 80
test.ribowaltz 37 3' UTR 1 0 0
test.ribowaltz 37 3' UTR 2 1 20
test.ribowaltz 38 5' UTR 0 0 0
test.ribowaltz 38 5' UTR 1 0 0
test.ribowaltz 38 5' UTR 2 0 0
test.ribowaltz 38 CDS 0 0 0
test.ribowaltz 38 CDS 1 0 0
test.ribowaltz 38 CDS 2 0 0
test.ribowaltz 38 3' UTR 0 0 0
test.ribowaltz 38 3' UTR 1 4 100
test.ribowaltz 38 3' UTR 2 0 0
test.ribowaltz 39 5' UTR 0 0 0
test.ribowaltz 39 5' UTR 1 0 0
test.ribowaltz 39 5' UTR 2 0 0
test.ribowaltz 39 CDS 0 0 0
test.ribowaltz 39 CDS 1 0 0
test.ribowaltz 39 CDS 2 0 0
test.ribowaltz 39 3' UTR 0 0 0
test.ribowaltz 39 3' UTR 1 0 0
test.ribowaltz 39 3' UTR 2 1 100
test.ribowaltz 40 5' UTR 0 0 0
test.ribowaltz 40 5' UTR 1 0 0
test.ribowaltz 40 5' UTR 2 0 0
test.ribowaltz 40 CDS 0 0 0
test.ribowaltz 40 CDS 1 0 0
test.ribowaltz 40 CDS 2 0 0
test.ribowaltz 40 3' UTR 0 0 0
test.ribowaltz 40 3' UTR 1 0 0
test.ribowaltz 40 3' UTR 2 0 0
test.ribowaltz 41 5' UTR 0 0 0
test.ribowaltz 41 5' UTR 1 0 0
test.ribowaltz 41 5' UTR 2 0 0
test.ribowaltz 41 CDS 0 0 0
test.ribowaltz 41 CDS 1 0 0
test.ribowaltz 41 CDS 2 0 0
test.ribowaltz 41 3' UTR 0 0 0
test.ribowaltz 41 3' UTR 1 0 0
test.ribowaltz 41 3' UTR 2 0 0
45 changes: 45 additions & 0 deletions data/ribowaltz/test.ribowaltz.length_bins_for_psite.tsv
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sample length count
start_codon 20 26
start_codon 21 116
start_codon 22 38
start_codon 23 83
start_codon 24 149
start_codon 25 465
start_codon 26 808
start_codon 27 1118
start_codon 28 1742
start_codon 29 255
start_codon 30 57
start_codon 31 11
start_codon 32 10
start_codon 33 6
start_codon 34 0
start_codon 35 0
start_codon 36 0
start_codon 37 0
start_codon 38 0
start_codon 39 0
start_codon 40 0
start_codon 41 0
whole_sample 20 1812
whole_sample 21 4114
whole_sample 22 11780
whole_sample 23 8109
whole_sample 24 12207
whole_sample 25 20127
whole_sample 26 22912
whole_sample 27 42769
whole_sample 28 63161
whole_sample 29 24926
whole_sample 30 7183
whole_sample 31 3540
whole_sample 32 1434
whole_sample 33 1370
whole_sample 34 373
whole_sample 35 264
whole_sample 36 172
whole_sample 37 38
whole_sample 38 7
whole_sample 39 4
whole_sample 40 0
whole_sample 41 3
15 changes: 15 additions & 0 deletions data/ribowaltz/test.ribowaltz.length_distribution.tsv
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Original file line number Diff line number Diff line change
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sample length count
test.ribowaltz 20 1812
test.ribowaltz 21 4114
test.ribowaltz 22 11780
test.ribowaltz 23 8109
test.ribowaltz 24 12207
test.ribowaltz 25 20127
test.ribowaltz 26 22912
test.ribowaltz 27 42769
test.ribowaltz 28 63161
test.ribowaltz 29 24926
test.ribowaltz 30 7183
test.ribowaltz 31 3540
test.ribowaltz 32 1434
test.ribowaltz 33 1370
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