Major configuration update

.gitignore

@@ -6,3 +6,9 @@ megalinter-reports/
 .DS_Store
 .mypy_cache/
 github_conf/
+output_*
+list_*.txt
+script_*.sh
+ListOutToMerge*.txt
+dpl-config*_edit.json
+workflows_edit.yml

codeHF/RunHFTaskLocal.C

@@ -13,6 +13,16 @@
 
 #include "../exec/utilitiesAli.h"
 
+#ifdef __CLING__
+// Tell ROOT where to find AliRoot headers
+R__ADD_INCLUDE_PATH($ALICE_ROOT)
+// Tell ROOT where to find AliPhysics headers
+R__ADD_INCLUDE_PATH($ALICE_PHYSICS)
+
+#include "PWGPP/PilotTrain/AddTaskCDBconnect.C"
+
+#endif
+
 Long64_t RunHFTaskLocal(TString txtfile = "./list_ali.txt",
                         TString jsonfilename = "dpl-config_std.json",
                         Bool_t isMC = kFALSE,
@@ -54,6 +64,10 @@ Long64_t RunHFTaskLocal(TString txtfile = "./list_ali.txt",
     mgr->SetMCtruthEventHandler(handler);
   }
 
+  // CDBconnect task
+  AliTaskCDBconnect* taskCDB = AddTaskCDBconnect();
+  taskCDB->SetFallBackToRaw(kTRUE);
+
   // Apply the event selection
   AliPhysicsSelectionTask* physSelTask = reinterpret_cast<AliPhysicsSelectionTask*>(gInterpreter->ProcessLine(Form(".x %s(%d)", gSystem->ExpandPathName("$ALICE_PHYSICS/OADB/macros/AddTaskPhysicsSelection.C"), isMC)));
 

codeHF/config_input.sh

@@ -151,12 +151,12 @@ case $INPUT_CASE in
     INPUT_TASK_CONFIG="DOO2_CONV_MCCOLL=1 DOO2_CONV_TRKEX_1_2=1"
     ;;
   17)
-    INPUT_LABEL="Run 3, p-p 13.6 TeV, LHC22o_pass7"
-    INPUT_DIR="$INPUT_BASE/Run3/pp_13.6TeV/real/LHC22o_pass7"
+    INPUT_LABEL="Run 3, p-p 13.6 TeV, LHC22o_pass4_minBias_small"
+    INPUT_DIR="$INPUT_BASE/Run3/pp_13.6TeV/real/LHC22o_pass4_minBias_small"
     INPUT_FILES="AO2D.root"
     INPUT_RUN=3
     INPUT_IS_O2=1
     INPUT_IS_MC=0
-    INPUT_TASK_CONFIG="DOO2_CONV_MCCOLL=1 DOO2_CONV_TRKEX_1_2=1"
+    INPUT_TASK_CONFIG="DOO2_CONV_MCCOLL=1 DOO2_CONV_BC=1 DOO2_CONV_TRKEX_0_2=1 DOO2_CONV_V0=1"
     ;;
   esac

codeHF/config_tasks_run5.sh

@@ -0,0 +1,99 @@
+#!/bin/bash
+# shellcheck disable=SC2034 # Ignore unused parameters.
+
+DATABASE_O2="workflows_run5.yml"  # Workflow specification database
+
+# Activation of O2 workflows
+DOO2_CAND_X=0       # hf-candidate-creator-x
+DOO2_CAND_CHIC=0    # hf-candidate-creator-chic
+DOO2_CAND_XICC=0    # hf-candidate-creator-xicc
+# Selectors
+DOO2_SEL_JPSI=0     # hf-candidate-selector-jpsi
+DOO2_SEL_X=0        # hf-candidate-selector-x-to-jpsi-pi-pi
+DOO2_SEL_CHIC=0     # hf-candidate-selector-chic-to-jpsi-gamma
+DOO2_SEL_XICC=0     # hf-candidate-selector-xicc-to-p-k-pi-pi
+# Analysis tasks
+DOO2_TASK_JPSI=0    # hf-task-jpsi
+DOO2_TASK_X=0       # hf-task-x
+DOO2_TASK_CHIC=0    # hf-task-chic
+DOO2_TASK_XICC=0    # hf-task-xicc
+# Tree creators
+DOO2_TREE_X=0       # hf-tree-creator-x-to-jpsi-pi-pi
+DOO2_TREE_CHIC=0    # hf-tree-creator-chic-to-jpsi-gamma
+DOO2_TREE_XICC=0    # hf-tree-creator-xicc-to-p-k-pi-pi
+# QA
+DOO2_REJ_ALICE3=0   # hf-task-qa-pid-rejection
+
+# Selection cuts
+APPLYCUTS_JPSI=0    # Apply J/ψ selection cuts.
+APPLYCUTS_X=0       # Apply X selection cuts.
+APPLYCUTS_CHIC=0    # Apply χc(1p) selection cuts.
+APPLYCUTS_XICC=0    # Apply Ξcc selection cuts.
+
+####################################################################################################
+
+# Modify the JSON file.
+function AdjustJson {
+  # Enable J/ψ selection.
+  if [ $APPLYCUTS_JPSI -eq 1 ]; then
+    MsgWarn "Using J/ψ selection cuts"
+    ReplaceString "\"selectionFlagJpsi\": \"0\"" "\"selectionFlagJpsi\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
+  fi
+
+  # Enable X(3872) selection.
+  if [ $APPLYCUTS_X -eq 1 ]; then
+    MsgWarn "Using X(3872) selection cuts"
+    ReplaceString "\"selectionFlagX\": \"0\"" "\"selectionFlagX\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
+  fi
+
+  # Enable χc(1p) selection.
+  if [ $APPLYCUTS_CHIC -eq 1 ]; then
+    MsgWarn "Using χc(1p) selection cuts"
+    ReplaceString "\"selectionFlagChic\": \"0\"" "\"selectionFlagChic\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
+  fi
+
+  # Enable Ξcc selection.
+  if [ $APPLYCUTS_XICC -eq 1 ]; then
+    MsgWarn "Using Ξcc selection cuts"
+    ReplaceString "\"selectionFlagXicc\": \"0\"" "\"selectionFlagXicc\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
+  fi
+}
+
+# Generate the O2 script containing the full workflow specification.
+function MakeScriptO2 {
+  WORKFLOWS=""
+  # Vertexing
+  [ $DOO2_CAND_X -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-x"
+  [ $DOO2_CAND_CHIC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-chic"
+  [ $DOO2_CAND_XICC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-xicc"
+  # Selectors
+  [ $DOO2_SEL_JPSI -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-jpsi${SUFFIX_RUN}"
+  [ $DOO2_SEL_X -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-x-to-jpsi-pi-pi"
+  [ $DOO2_SEL_CHIC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-chic-to-jpsi-gamma"
+  [ $DOO2_SEL_XICC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-xicc-to-p-k-pi-pi"
+  # Analysis tasks
+  [ $DOO2_TASK_JPSI -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-jpsi"
+  [ $DOO2_TASK_X -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-x"
+  [ $DOO2_TASK_CHIC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-chic"
+  [ $DOO2_TASK_XICC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-xicc"
+  # Tree creators
+  [ $DOO2_TREE_X -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-x-to-jpsi-pi-pi"
+  [ $DOO2_TREE_CHIC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-chic-to-jpsi-gamma"
+  [ $DOO2_TREE_XICC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-xicc-to-p-k-pi-pi"
+  # QA
+  [ $DOO2_REJ_ALICE3 -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-qa-pid-rejection"
+}
+
+function MakeScriptPostprocess {
+  # Compare AliPhysics and O2 histograms.
+  [[ $DOALI -eq 1 && $DOO2 -eq 1 ]] && {
+    OPT_COMPARE=""
+    [ $DOO2_TASK_JPSI -eq 1 ] && OPT_COMPARE+=" jpsi "
+  }
+  # Plot particle reconstruction efficiencies.
+  [[ $DOO2 -eq 1 && $INPUT_IS_MC -eq 1 ]] && {
+    PARTICLES=""
+    [ $DOO2_TASK_JPSI -eq 1 ] && PARTICLES+=" jpsi "
+    [ $DOO2_TASK_XICC -eq 1 ] && PARTICLES+=" xicc-mc "
+  }
+}