Release 0.6.0

.github/workflows/build.yml

@@ -58,6 +58,9 @@ jobs:
 
     runs-on: ${{ matrix.os }}
 
+    env:
+      MPLBACKEND: Agg
+
     steps:
       - name: Cache dependencies
         id: pip-cache
@@ -75,10 +78,16 @@ jobs:
           python-version: ${{ matrix.python-version }}
 
       - name: Install package
+        # NOTE(stes): https://github.com/twmr/pytest-sphinx/issues/69
+        # To run all tests, currently a manual install from github is required:
+        # https://github.com/twmr/pytest-sphinx/archive/refs/tags/v0.7.0.tar.gz
+        # Remove the respective line and the comment in setup.cfg once 0.7.0 is
+        # available on PyPI.
         run: |
           python -m pip install --upgrade pip setuptools wheel
           python -m pip install torch==${{ matrix.torch-version }} --extra-index-url https://download.pytorch.org/whl/cpu
           pip install '.[dev,datasets,integrations]'
+          pip install https://github.com/twmr/pytest-sphinx/archive/refs/tags/v0.7.0.tar.gz
 
       - name: Check sklearn legacy version
         if: matrix.sklearn-version == 'legacy'

.github/workflows/release-pypi.yml

@@ -47,7 +47,7 @@ jobs:
           make dist
           ls dist/
           tar tvf dist/cebra-*.tar.gz
-          python3 -m twine upload --repository testpypi dist/*
+          python3 -m twine upload --verbose --repository testpypi dist/*
 
       - name: Build and publish to PyPI
         if: ${{ github.event_name == 'push' }}
@@ -58,4 +58,4 @@ jobs:
           make dist
           ls dist/
           tar tvf dist/cebra-*.tar.gz
-          python3 -m twine upload dist/*
+          python3 -m twine upload --verbose dist/*

Dockerfile

@@ -40,7 +40,7 @@ RUN make dist
 FROM cebra-base
 
 # install the cebra wheel
-ENV WHEEL=cebra-0.6.0a2-py3-none-any.whl
+ENV WHEEL=cebra-0.6.0-py3-none-any.whl
 WORKDIR /build
 COPY --from=wheel /build/dist/${WHEEL} .
 RUN pip install --no-cache-dir ${WHEEL}'[dev,integrations,datasets]'

Makefile

@@ -1,4 +1,4 @@
-CEBRA_VERSION := 0.6.0a2
+CEBRA_VERSION := 0.6.0
 
 dist:
 	python3 -m pip install virtualenv

PKGBUILD

@@ -1,7 +1,7 @@
 # Maintainer: Steffen Schneider <stes@hey.com>
 pkgname=python-cebra
 _pkgname=cebra
-pkgver=0.6.0a2
+pkgver=0.6.0
 pkgrel=1
 pkgdesc="Consistent Embeddings of high-dimensional Recordings using Auxiliary variables"
 url="https://cebra.ai"

cebra/__init__.py

@@ -66,7 +66,7 @@
 
 import cebra.integrations.sklearn as sklearn
 
-__version__ = "0.6.0a2"
+__version__ = "0.6.0"
 __all__ = ["CEBRA"]
 __allow_lazy_imports = False
 __lazy_imports = {}

reinstall.sh

@@ -15,7 +15,7 @@ pip uninstall -y cebra
 # Get version info after uninstalling --- this will automatically get the
 # most recent version based on the source code in the current directory.
 # $(tools/get_cebra_version.sh)
-VERSION=0.6.0a2
+VERSION=0.6.0
 echo "Upgrading to CEBRA v${VERSION}"
 
 # Upgrade the build system (PEP517/518 compatible)

setup.cfg

@@ -6,6 +6,7 @@ author_email = stes@hey.com, mackenzie@post.harvard.edu
 description = Consistent Embeddings of high-dimensional Recordings using Auxiliary variables
 long_description = file: README.md
 long_description_content_type = text/markdown
+license = Apache-2.0
 license_files = LICENSE.md
 license_file_type = text/markdown
 url = https://github.com/AdaptiveMotorControlLab/CEBRA
@@ -18,9 +19,6 @@ classifiers =
     Operating System :: OS Independent
     Programming Language :: Python :: 3
     Topic :: Scientific/Engineering :: Artificial Intelligence
-    # NOTE(stes): Upgrade according to https://github.com/pypa/trove-classifiers/issues/17#issuecomment-385027197
-    # once the new classifiers are published
-    License :: OSI Approved :: Apache Software License
 
 
 [options]
@@ -105,7 +103,10 @@ dev =
     pytest-xdist
     pytest-timeout
     # NOTE(stes): https://github.com/twmr/pytest-sphinx/issues/69
-    pytest-sphinx @ https://github.com/twmr/pytest-sphinx/archive/refs/tags/v0.7.0.tar.gz
+    # To run all tests, currently a manual install from github is required:
+    # https://github.com/twmr/pytest-sphinx/archive/refs/tags/v0.7.0.tar.gz
+    # See .github/workflows/build.yml for more details.
+    pytest-sphinx
     licenseheaders
     interrogate
     # TODO(stes) Add back once upstream issue