diff --git a/.clang-format b/.clang-format index e9ab196..997b526 100644 --- a/.clang-format +++ b/.clang-format @@ -1,23 +1,7 @@ -# This file is part of preseq -# -# Copyright (C) 2024: Andrew D. Smith -# -# Authors: Andrew D. Smith -# -# This is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by -# the Free Software Foundation, either version 3 of the License, or -# (at your option) any later version. -# -# This software is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -# General Public License for more details. - BasedOnStyle: LLVM ColumnLimit: 80 IndentWidth: 2 -AlwaysBreakAfterReturnType: TopLevel +AlwaysBreakAfterReturnType: All ContinuationIndentWidth: 2 ConstructorInitializerIndentWidth: 2 BraceWrapping: @@ -26,3 +10,4 @@ BraceWrapping: BreakBeforeBraces: Custom BreakConstructorInitializers: AfterColon SpacesBeforeTrailingComments: 2 +ReflowComments: false diff --git a/.clang-format-ignore b/.clang-format-ignore new file mode 100644 index 0000000..de5042e --- /dev/null +++ b/.clang-format-ignore @@ -0,0 +1,2 @@ +src/CLI11/CLI11.hpp +src/nlohmann/json.hpp diff --git a/.clang-tidy b/.clang-tidy new file mode 100644 index 0000000..fd5b64e --- /dev/null +++ b/.clang-tidy @@ -0,0 +1,31 @@ +Checks: 'cert-*,cppcoreguidelines-*,performance-*,clang-diagnostic-*,clang-analyzer-*,-clang-diagnostic-unqualified-std-cast-call,-clang-diagnostic-unknown-warning-option,-clang-analyzer-unix.BlockInCriticalSection,-cppcoreguidelines-pro-type-vararg' +WarningsAsErrors: '*' +HeaderFileExtensions: + - '' + - h + - hh + - hpp + - hxx +ImplementationFileExtensions: + - c + - cc + - cpp + - cxx +HeaderFilterRegex: '' +ExcludeHeaderFilterRegex: 'OptionParser.hpp' +FormatStyle: none +CheckOptions: + cert-dcl16-c.NewSuffixes: 'L;LL;LU;LLU' + cert-err33-c.AllowCastToVoid: 'true' + cert-err33-c.CheckedFunctions: '::aligned_alloc;::asctime_s;::at_quick_exit;::atexit;::bsearch;::bsearch_s;::btowc;::c16rtomb;::c32rtomb;::calloc;::clock;::cnd_broadcast;::cnd_init;::cnd_signal;::cnd_timedwait;::cnd_wait;::ctime_s;::fclose;::fflush;::fgetc;::fgetpos;::fgets;::fgetwc;::fopen;::fopen_s;::fprintf;::fprintf_s;::fputc;::fputs;::fputwc;::fputws;::fread;::freopen;::freopen_s;::fscanf;::fscanf_s;::fseek;::fsetpos;::ftell;::fwprintf;::fwprintf_s;::fwrite;::fwscanf;::fwscanf_s;::getc;::getchar;::getenv;::getenv_s;::gets_s;::getwc;::getwchar;::gmtime;::gmtime_s;::localtime;::localtime_s;::malloc;::mbrtoc16;::mbrtoc32;::mbsrtowcs;::mbsrtowcs_s;::mbstowcs;::mbstowcs_s;::memchr;::mktime;::mtx_init;::mtx_lock;::mtx_timedlock;::mtx_trylock;::mtx_unlock;::printf_s;::putc;::putwc;::raise;::realloc;::remove;::rename;::scanf;::scanf_s;::setlocale;::setvbuf;::signal;::snprintf;::snprintf_s;::sprintf;::sprintf_s;::sscanf;::sscanf_s;::strchr;::strerror_s;::strftime;::strpbrk;::strrchr;::strstr;::strtod;::strtof;::strtoimax;::strtok;::strtok_s;::strtol;::strtold;::strtoll;::strtoul;::strtoull;::strtoumax;::strxfrm;::swprintf;::swprintf_s;::swscanf;::swscanf_s;::thrd_create;::thrd_detach;::thrd_join;::thrd_sleep;::time;::timespec_get;::tmpfile;::tmpfile_s;::tmpnam;::tmpnam_s;::tss_create;::tss_get;::tss_set;::ungetc;::ungetwc;::vfprintf;::vfprintf_s;::vfscanf;::vfscanf_s;::vfwprintf;::vfwprintf_s;::vfwscanf;::vfwscanf_s;::vprintf_s;::vscanf;::vscanf_s;::vsnprintf;::vsnprintf_s;::vsprintf;::vsprintf_s;::vsscanf;::vsscanf_s;::vswprintf;::vswprintf_s;::vswscanf;::vswscanf_s;::vwprintf_s;::vwscanf;::vwscanf_s;::wcrtomb;::wcschr;::wcsftime;::wcspbrk;::wcsrchr;::wcsrtombs;::wcsrtombs_s;::wcsstr;::wcstod;::wcstof;::wcstoimax;::wcstok;::wcstok_s;::wcstol;::wcstold;::wcstoll;::wcstombs;::wcstombs_s;::wcstoul;::wcstoull;::wcstoumax;::wcsxfrm;::wctob;::wctrans;::wctype;::wmemchr;::wprintf_s;::wscanf;::wscanf_s;' + cert-oop54-cpp.WarnOnlyIfThisHasSuspiciousField: 'false' + cert-str34-c.DiagnoseSignedUnsignedCharComparisons: 'false' + cppcoreguidelines-non-private-member-variables-in-classes.IgnorePublicMemberVariables: 'true' + google-readability-braces-around-statements.ShortStatementLines: '1' + google-readability-function-size.StatementThreshold: '800' + google-readability-namespace-comments.ShortNamespaceLines: '10' + google-readability-namespace-comments.SpacesBeforeComments: '2' + llvm-else-after-return.WarnOnConditionVariables: 'false' + llvm-else-after-return.WarnOnUnfixable: 'false' + llvm-qualified-auto.AddConstToQualified: 'false' +SystemHeaders: 'false' diff --git a/.cppcheck_suppress b/.cppcheck_suppress index 45e2b9e..aae5583 100644 --- a/.cppcheck_suppress +++ b/.cppcheck_suppress @@ -1,6 +1,6 @@ # This file is part of preseq # -# Copyright (C) 2024: Andrew D. Smith +# Copyright (C) 2024-2025 Andrew D. Smith # # Authors: Andrew D. Smith # @@ -17,7 +17,18 @@ missingIncludeSystem constVariablePointer checkersReport -unusedFunction:src/bam_record_utils.hpp -unusedFunction:src/bam_record_utils.cpp -*:src/smithlab_cpp* -unusedStructMember:src/*.hpp +unknownMacro +unmatchedSuppression +# Ignore unused function because it's too hard to get right +unusedFunction +# Ignore unused struct member because this won't go unnoticed anyway +unusedStructMember +# Ignore missing includes because if they are real things won't build +missingInclude +# Exclude external files +*:*CLI11.hpp +*:*json.hpp +# Problem caused by external files +toomanyconfigs +# More problems caused by external files -- with too many ifdefs +normalCheckLevelMaxBranches diff --git a/.gitmodules b/.gitmodules index 0b7b9ae..128a3ce 100644 --- a/.gitmodules +++ b/.gitmodules @@ -1,9 +1,6 @@ [submodule "preseqR"] path = preseqR url = ../preseqR.git -[submodule "src/smithlab_cpp"] - path = src/smithlab_cpp - url = ../smithlab_cpp.git [submodule "src/bamxx"] path = src/bamxx url = ../bamxx.git diff --git a/CMakeLists.txt b/CMakeLists.txt new file mode 100644 index 0000000..1efda34 --- /dev/null +++ b/CMakeLists.txt @@ -0,0 +1,55 @@ +# Copyright (C) 2025 Andrew D Smith +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU General Public License as published by the Free +# Software Foundation, either version 3 of the License, or (at your option) +# any later version. +# +# This program is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. +# +# You should have received a copy of the GNU General Public License along with +# this program. If not, see . + +# to find the version of cmake do +# $ cmake --version +cmake_minimum_required(VERSION 3.30) +project( + preseq + VERSION 3.2.0 + DESCRIPTION + "predict properties of genomic sequencing libraries" + HOMEPAGE_URL https://github.com/smithlabcode/preseq + LANGUAGES CXX) + +# Set language version used +set(CMAKE_CXX_STANDARD 17) +set(CMAKE_CXX_STANDARD_REQUIRED yes) +set(CMAKE_CXX_EXTENSIONS off) # prevents std=gnu++17 +set(CMAKE_EXPORT_COMPILE_COMMANDS on) + +include(CheckIncludeFileCXX) +include(CheckFunctionExists) +include(CheckCXXCompilerFlag) + +include(GNUInstallDirs) + +configure_file(data/config.h.in config.h) + +list(APPEND CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake") + +add_compile_options( + -Wall + -Wextra + -Wpedantic + -Werror + -Wfatal-errors +) + +if(STATIC_ANALYSIS) + include(cmake/static_analysis.cmake) +endif() + +add_subdirectory(src) diff --git a/CPPLINT.cfg b/CPPLINT.cfg index 52bd4ce..51ed1b8 100644 --- a/CPPLINT.cfg +++ b/CPPLINT.cfg @@ -1,19 +1,16 @@ # This file is part of preseq # -# Copyright (C) 2024: Andrew D. Smith +# Copyright (C) 2023-2025 Andrew D. Smith # -# Authors: Andrew D. Smith +# This is free software: you can redistribute it and/or modify it under the +# terms of the GNU General Public License as published by the Free Software +# Foundation, either version 3 of the License, or (at your option) any later +# version. # -# This is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by -# the Free Software Foundation, either version 3 of the License, or -# (at your option) any later version. -# -# This software is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -# General Public License for more details. - +# This software is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. set noparent filter=-runtime/references filter=-build/include_subdir @@ -26,3 +23,6 @@ filter=-whitespace/newline filter=-readability/braces filter=-whitespace/semicolon filter=-whitespace/indent +filter=-whitespace/braces +filter=-whitespace/parens +filter=-readability/nolint diff --git a/Makefile b/Makefile deleted file mode 100644 index a92b07a..0000000 --- a/Makefile +++ /dev/null @@ -1,32 +0,0 @@ -# Copyright (C) 2011-2020 University of Southern California and -# Andrew D. Smith and Timothy Daley -# -# Authors: Timothy Daley and Andrew D. Smith -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU General Public License as published by -# the Free Software Foundation, either version 3 of the License, or -# (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -# General Public License for more details. - -ifndef install_dir -install_dir := $(dir $(abspath $(lastword $(MAKEFILE_LIST)))) -endif - -all: - @make -C src - -install: - @make -C src install_dir=$(install_dir) install - -clean: - @make -C src clean - -distclean: clean - @rm -rf $(install_dir)/bin - -.PHONY: all distclean clean install diff --git a/Makefile.am b/Makefile.am index 04f3747..33b397d 100644 --- a/Makefile.am +++ b/Makefile.am @@ -1,30 +1,28 @@ # This file is part of preseq # -# Copyright (C) 2018-2024: Andrew D. Smith +# Copyright (C) 2018-2025: Andrew D. Smith # # Authors: Andrew D. Smith # -# This is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by -# the Free Software Foundation, either version 3 of the License, or -# (at your option) any later version. +# This is free software: you can redistribute it and/or modify it under the +# terms of the GNU General Public License as published by the Free Software +# Foundation, either version 3 of the License, or (at your option) any later +# version. # -# This software is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -# General Public License for more details. +# This software is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. ACLOCAL_AMFLAGS = -I m4 -SUBDIRS := src/smithlab_cpp -install installdirs: SUBDIRS := $(filter-out src/smithlab_cpp, $(SUBDIRS)) -AM_CPPFLAGS = -I $(top_srcdir)/src/smithlab_cpp -if ENABLE_HTS +AM_CPPFLAGS = +if ENABLE_HTSLIB AM_CPPFLAGS += -I $(top_srcdir)/src/bamxx endif AM_CPPFLAGS += -Wall -Wextra -Wpedantic -Wno-unknown-attributes -if ENABLE_HTS +if ENABLE_HTSLIB AM_CPPFLAGS += -DHAVE_HTSLIB endif @@ -36,7 +34,7 @@ EXTRA_DIST = \ docs \ tests/md5sum.txt \ tests/data/lc_extrap_input.vals \ - tests/data/gc_extrap_input.mr \ + tests/data/gc_extrap_input.bed \ tests/data/c_curve_input.hist \ tests/scripts/test_c_curve.test \ tests/scripts/test_gc_extrap.test \ @@ -49,8 +47,6 @@ TESTS = \ TEST_EXTENSIONS = .test -LDADD = src/smithlab_cpp/libsmithlab_cpp.a - bin_PROGRAMS = preseq preseq_SOURCES = \ @@ -71,10 +67,12 @@ preseq_SOURCES = \ src/continued_fraction.cpp \ src/load_data_for_complexity.hpp \ src/load_data_for_complexity.cpp \ + src/Interval6.hpp \ + src/Interval6.cpp \ src/moment_sequence.hpp \ src/moment_sequence.cpp -if ENABLE_HTS +if ENABLE_HTSLIB preseq_SOURCES += \ src/bamxx/bamxx.hpp \ src/bam_record_utils.hpp \ diff --git a/cmake/FindHTSLIB.cmake b/cmake/FindHTSLIB.cmake new file mode 100644 index 0000000..fcd85ea --- /dev/null +++ b/cmake/FindHTSLIB.cmake @@ -0,0 +1,182 @@ +# SPDX-License-Identifier: GPL-3.0-or-later; (c) 2025 Andrew D Smith (author) +#[=======================================================================[.rst: +FindHTSLIB +-------- + +Find the native HTSLib includes and library. Based on the ZLIB module. + +#]=======================================================================] + +cmake_policy(PUSH) +cmake_policy(SET CMP0159 NEW) # file(STRINGS) with REGEX updates CMAKE_MATCH_ + +if(HTSLIB_FIND_COMPONENTS AND NOT HTSLIB_FIND_QUIETLY) + message(AUTHOR_WARNING + "HTSLib does not provide any COMPONENTS. Calling\n" + " find_package(HTSLIB COMPONENTS ...)\n" + "will always fail." + ) +endif() + +set(_HTSLIB_SEARCHES) + +# Search HTSLIB_ROOT first if it is set. +if(HTSLIB_ROOT) + set(_HTSLIB_SEARCH_ROOT PATHS ${HTSLIB_ROOT} NO_DEFAULT_PATH) + list(APPEND _HTSLIB_SEARCHES _HTSLIB_SEARCH_ROOT) +endif() + +# Normal search. +# Windows stuff +set(_HTSLIB_x86 "(x86)") +set(_HTSLIB_SEARCH_NORMAL + PATHS "$ENV{ProgramFiles}/htslib" + "$ENV{ProgramFiles${_HTSLIB_x86}}/htslib") +unset(_HTSLIB_x86) +list(APPEND _HTSLIB_SEARCHES _HTSLIB_SEARCH_NORMAL) + +if(HTSLIB_USE_STATIC_LIBS) + set(HTSLIB_NAMES hts) + set(HTSLIB_NAMES_DEBUG hts) +else() + set(HTSLIB_NAMES hts) + set(HTSLIB_NAMES_DEBUG hts) +endif() + +# Try each search configuration. +foreach(search ${_HTSLIB_SEARCHES}) + find_path(HTSLIB_INCLUDE_DIR NAMES htslib ${${search}} PATH_SUFFIXES include) +endforeach() + +# Allow HTSLIB_LIBRARY to be set manually, as the location of the htslib library +if(NOT HTSLIB_LIBRARY) + if(DEFINED CMAKE_FIND_LIBRARY_PREFIXES) + set(_htslib_ORIG_CMAKE_FIND_LIBRARY_PREFIXES "${CMAKE_FIND_LIBRARY_PREFIXES}") + else() + set(_htslib_ORIG_CMAKE_FIND_LIBRARY_PREFIXES) + endif() + if(DEFINED CMAKE_FIND_LIBRARY_SUFFIXES) + set(_htslib_ORIG_CMAKE_FIND_LIBRARY_SUFFIXES "${CMAKE_FIND_LIBRARY_SUFFIXES}") + else() + set(_htslib_ORIG_CMAKE_FIND_LIBRARY_SUFFIXES) + endif() + # Prefix/suffix of the win32/Makefile.gcc build + if(WIN32) + list(APPEND CMAKE_FIND_LIBRARY_PREFIXES "" "lib") + list(APPEND CMAKE_FIND_LIBRARY_SUFFIXES ".dll.a") + endif() + # Support preference of static libs by adjusting CMAKE_FIND_LIBRARY_SUFFIXES + if(HTSLIB_USE_STATIC_LIBS) + if(WIN32) + set(CMAKE_FIND_LIBRARY_SUFFIXES .lib .a ${CMAKE_FIND_LIBRARY_SUFFIXES}) + else() + set(CMAKE_FIND_LIBRARY_SUFFIXES .a) + endif() + endif() + + foreach(search ${_HTSLIB_SEARCHES}) + find_library(HTSLIB_LIBRARY_RELEASE NAMES ${HTSLIB_NAMES} NAMES_PER_DIR ${${search}} PATH_SUFFIXES lib) + find_library(HTSLIB_LIBRARY_DEBUG NAMES ${HTSLIB_NAMES_DEBUG} NAMES_PER_DIR ${${search}} PATH_SUFFIXES lib) + endforeach() + + # Restore the original find library ordering + if(DEFINED _htslib_ORIG_CMAKE_FIND_LIBRARY_SUFFIXES) + set(CMAKE_FIND_LIBRARY_SUFFIXES "${_htslib_ORIG_CMAKE_FIND_LIBRARY_SUFFIXES}") + else() + set(CMAKE_FIND_LIBRARY_SUFFIXES) + endif() + if(DEFINED _htslib_ORIG_CMAKE_FIND_LIBRARY_PREFIXES) + set(CMAKE_FIND_LIBRARY_PREFIXES "${_htslib_ORIG_CMAKE_FIND_LIBRARY_PREFIXES}") + else() + set(CMAKE_FIND_LIBRARY_PREFIXES) + endif() + + include(SelectLibraryConfigurations) + select_library_configurations(HTSLIB) +endif() + +unset(HTSLIB_NAMES) +unset(HTSLIB_NAMES_DEBUG) + +mark_as_advanced(HTSLIB_INCLUDE_DIR) + +if(HTSLIB_INCLUDE_DIR AND EXISTS "${HTSLIB_INCLUDE_DIR}/htslib/hts.h") + # Example: #define HTS_VERSION 101300 + file(STRINGS "${HTSLIB_INCLUDE_DIR}/htslib/hts.h" HTSLIB_H_LIST REGEX "^#define HTS_VERSION") + list(GET HTSLIB_H_LIST 0 HTSLIB_H) # Take the first matching line + if (HTSLIB_H MATCHES "#define[ \t]+HTS_VERSION[ \t]+\([0-9]+\)") + set(NUMERIC_VERSION "${CMAKE_MATCH_1}") + # Extract digits by position in string + # XYYYZZ => X = major, YYY = minor, ZZ = patch + string(SUBSTRING "${NUMERIC_VERSION}" 0 1 HTSLIB_VERSION_MAJOR) + string(SUBSTRING "${NUMERIC_VERSION}" 1 3 HTSLIB_VERSION_MINOR) + string(SUBSTRING "${NUMERIC_VERSION}" 4 2 HTSLIB_VERSION_PATCH) + else() + set(HTSLIB_VERSION_STRING "") + set(HTSLIB_VERSION_MAJOR "") + set(HTSLIB_VERSION_MINOR "") + set(HTSLIB_VERSION_PATCH "") + endif() + + # Make sure the version numbers don't have leading zeros + # The minor version is encoded in such a way that it often will + foreach(part HTSLIB_VERSION_MAJOR HTSLIB_VERSION_MINOR HTSLIB_VERSION_PATCH) + if(${${part}} MATCHES "^[0]+$") + set(${part} "0") + else() + string(REGEX REPLACE "^0+" "" ${part} "${${part}}") + endif() + endforeach() + + # Set canonical variables + set(HTSLIB_MAJOR_VERSION "${HTSLIB_VERSION_MAJOR}") + set(HTSLIB_MINOR_VERSION "${HTSLIB_VERSION_MINOR}") + set(HTSLIB_PATCH_VERSION "${HTSLIB_VERSION_PATCH}") + # Build the standard version string + set(HTSLIB_VERSION "${HTSLIB_VERSION_MAJOR}.${HTSLIB_VERSION_MINOR}") + # Only append patch if it's not "00" + if(NOT HTSLIB_VERSION_PATCH STREQUAL "00") + set(HTSLIB_VERSION "${HTSLIB_VERSION}.${HTSLIB_VERSION_PATCH}") + endif() +endif() + +include(FindPackageHandleStandardArgs) +FIND_PACKAGE_HANDLE_STANDARD_ARGS( + HTSLIB + REQUIRED_VARS + HTSLIB_LIBRARY + HTSLIB_INCLUDE_DIR + VERSION_VAR + HTSLIB_VERSION + HANDLE_COMPONENTS +) + +if(HTSLIB_FOUND) + set(HTSLIB_INCLUDE_DIRS ${HTSLIB_INCLUDE_DIR}) + if(NOT HTSLIB_LIBRARIES) + set(HTSLIB_LIBRARIES ${HTSLIB_LIBRARY}) + endif() + if(NOT TARGET HTSLIB::HTSLIB) + add_library(HTSLIB::HTSLIB UNKNOWN IMPORTED) + set_target_properties(HTSLIB::HTSLIB PROPERTIES + INTERFACE_INCLUDE_DIRECTORIES "${HTSLIB_INCLUDE_DIRS}") + if(HTSLIB_LIBRARY_RELEASE) + set_property(TARGET HTSLIB::HTSLIB APPEND PROPERTY + IMPORTED_CONFIGURATIONS RELEASE) + set_target_properties(HTSLIB::HTSLIB PROPERTIES + IMPORTED_LOCATION_RELEASE "${HTSLIB_LIBRARY_RELEASE}") + endif() + if(HTSLIB_LIBRARY_DEBUG) + set_property(TARGET HTSLIB::HTSLIB APPEND PROPERTY + IMPORTED_CONFIGURATIONS DEBUG) + set_target_properties(HTSLIB::HTSLIB PROPERTIES + IMPORTED_LOCATION_DEBUG "${HTSLIB_LIBRARY_DEBUG}") + endif() + if(NOT HTSLIB_LIBRARY_RELEASE AND NOT HTSLIB_LIBRARY_DEBUG) + set_property(TARGET HTSLIB::HTSLIB APPEND PROPERTY + IMPORTED_LOCATION "${HTSLIB_LIBRARY}") + endif() + endif() +endif() + +cmake_policy(POP) diff --git a/cmake/static_analysis.cmake b/cmake/static_analysis.cmake new file mode 100644 index 0000000..f1323ad --- /dev/null +++ b/cmake/static_analysis.cmake @@ -0,0 +1,119 @@ +# Copyright (C) 2025 Andrew D Smith +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU General Public License as published by the Free +# Software Foundation, either version 3 of the License, or (at your option) +# any later version. +# +# This program is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. +# +# You should have received a copy of the GNU General Public License along with +# this program. If not, see . + +# StaticAnalysis +message(STATUS "Enabling static analysis") +# If no specific static analysis is requested, do them all +if(NOT RUN_CPPCHECK AND NOT RUN_IWYU AND + NOT RUN_CPPLINT AND NOT RUN_CLANG_TIDY) + set(RUN_CPPCHECK on) + set(RUN_IWYU on) + set(RUN_CPPLINT on) + set(RUN_CLANG_TIDY on) +endif() + +set(STATIC_ANALYSIS_CHECKS "") +if(RUN_CPPCHECK) + list(APPEND STATIC_ANALYSIS_CHECKS "cppcheck") +endif() +if(RUN_CPPLINT) + list(APPEND STATIC_ANALYSIS_CHECKS "cpplint") +endif() +if(RUN_IWYU) + list(APPEND STATIC_ANALYSIS_CHECKS "iwyu") +endif() +if(RUN_CLANG_TIDY) + list(APPEND STATIC_ANALYSIS_CHECKS "clang-tidy") +endif() + +message(STATUS "Requested static analysis: ${STATIC_ANALYSIS_CHECKS}") + +# cpplint: all options are in the config file +if ("cpplint" IN_LIST STATIC_ANALYSIS_CHECKS) + find_program(FOUND_CPPLINT cpplint) + if(FOUND_CPPLINT) + message(STATUS "Enabling cpplint analysis") + set(CMAKE_CXX_CPPLINT cpplint --quiet) + else() + message(STATUS "Could not find cpplint; disabling cpplint") + endif() +endif() + +# include-what-you-use: config is a mappings file +if ("iwyu" IN_LIST STATIC_ANALYSIS_CHECKS) + find_program(FOUND_IWYU include-what-you-use) + if(FOUND_IWYU) + message(STATUS "Enabling include-what-you-use analysis") + set(CMAKE_CXX_INCLUDE_WHAT_YOU_USE + include-what-you-use + -Xiwyu + --comment_style=none + -Xiwyu + --quoted_includes_first + -Xiwyu + --mapping_file=${PROJECT_SOURCE_DIR}/iwyu.json + ) + else() + message(STATUS "Could not find iwyu; disabling iwyu") + endif() +endif() + +# cppcheck: options on the command line as there is no config file +if ("cppcheck" IN_LIST STATIC_ANALYSIS_CHECKS) + find_program(FOUND_CPPCHECK cppcheck) + if(FOUND_CPPCHECK) + message(STATUS "Enabling cppcheck analysis") + set(CMAKE_CXX_CPPCHECK + cppcheck + --quiet + --enable=all + --inline-suppr + --max-configs=1 + --suppressions-list=${PROJECT_SOURCE_DIR}/.cppcheck_suppress + ) + else() + message(STATUS "Could not find cppcheck; disabling cppcheck") + endif() +endif() + +# clang-tidy: need to make sure version is at least 20 +if ("clang-tidy" IN_LIST STATIC_ANALYSIS_CHECKS) + find_program(CLANG_TIDY_EXECUTABLE NAMES clang-tidy) + # Minimum required version + set(MIN_CLANG_TIDY_VERSION "20.0.0") + if(CLANG_TIDY_EXECUTABLE) + execute_process( + COMMAND + bash -c + "${CLANG_TIDY_EXECUTABLE} --version | grep version | tr -cd '0-9.\n'" + OUTPUT_VARIABLE CLANG_TIDY_VERSION + OUTPUT_STRIP_TRAILING_WHITESPACE + ) + # Compare the version numbers + if(CLANG_TIDY_VERSION VERSION_GREATER_EQUAL MIN_CLANG_TIDY_VERSION) + message(STATUS "Enabling clang-tidy (version: ${CLANG_TIDY_VERSION})") + set(CMAKE_CXX_CLANG_TIDY + clang-tidy + --quiet + --allow-no-checks + -p ${PROJECT_BINARY_DIR} + ) + else() + message(STATUS "Not enabling clang-tidy (min version not found") + endif() + else() + message(STATUS "Could not find clang-tidy; disabling clang-tidy") + endif() +endif() diff --git a/configure.ac b/configure.ac index a01bfda..bcf4ddf 100644 --- a/configure.ac +++ b/configure.ac @@ -1,50 +1,86 @@ -dnl This file is part of preseq -dnl -dnl Copyright (C) 2018-2024: Andrew D. Smith +dnl Copyright (C) 2018-2025: Andrew D. Smith dnl dnl Authors: Andrew D. Smith dnl -dnl This is free software: you can redistribute it and/or modify it -dnl under the terms of the GNU General Public License as published by -dnl the Free Software Foundation, either version 3 of the License, or -dnl (at your option) any later version. +dnl This is free software: you can redistribute it and/or modify it under the +dnl terms of the GNU General Public License as published by the Free Software +dnl Foundation, either version 3 of the License, or (at your option) any later +dnl version. dnl -dnl This software is distributed in the hope that it will be useful, -dnl but WITHOUT ANY WARRANTY; without even the implied warranty of -dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -dnl General Public License for more details. - -AC_INIT([preseq], [3.2.0], [andrewds@usc.edu], - [preseq], [https://github.com/smithlabcode/preseq]) -dnl the config.h is not currently #included in the source, and only -dnl used to keep command lines short. +dnl This software is distributed in the hope that it will be useful, but +dnl WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY +dnl or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License +dnl for more details. + +AC_INIT([preseq], + [3.2.0], + [andrewds@usc.edu], + [preseq], + [https://github.com/smithlabcode/preseq]) + +dnl the config.h is not currently #included in the source, and only used to +dnl keep command lines short. AC_CONFIG_HEADERS([config.h]) AM_INIT_AUTOMAKE([subdir-objects foreign]) AC_CONFIG_MACRO_DIR([m4]) AC_LANG(C++) AC_PROG_CXX -AX_CXX_COMPILE_STDCXX_17([noext], [mandatory]) +AX_CXX_COMPILE_STDCXX(17, [noext], [mandatory]) AC_PROG_RANLIB -dnl recursively configure smithlab_cpp -AC_CONFIG_SUBDIRS([src/smithlab_cpp]) - -dnl check for HTSLib if requested hts_fail_msg=" -Failed to locate HTSLib on your system. Please use the LDFLAGS and -CPPFLAGS variables to specify the directories where the HTSLib library -and headers can be found. +Failed to locate the HTSLib library on your system. Please use the LDFLAGS and +CPPFLAGS variables to specify the directories where the HTSLib library and +headers can be found. + +If you want to disable HTSLib when building preseq, use the --disable-htslib +argument to the configure script. +" + +libdeflate_fail_msg=" + +Failed to locate libdeflate on your system. This is a common dependency of +HTSLib. If your HTSLib was built without libdeflate, you can give the +--disable-libdeflate argument to configure. If you do not need to directly +process SAM/BAM files with preseq, consider using the argument +--without-htslib to build preseq without support for reading SAM/BAM. + +If you need libdeflate, please use the LDFLAGS and CPPFLAGS variables to +specify the directories where the library and headers can be found on your +system. " -AC_ARG_ENABLE([hts], - [AS_HELP_STRING([--enable-hts], [Enable HTSLib @<:@yes@:>@])], - [enable_hts=yes], [enable_hts=no]) -AS_IF([test "x$enable_hts" = "xyes"], - [AC_CHECK_LIB([hts], [hts_version], [], - [AC_MSG_FAILURE([$hts_fail_msg])])] + +AC_ARG_ENABLE([htslib], + [AS_HELP_STRING([--enable-htslib], [use HTSLib to allow BAM/SAM input])], + [enable_htslib=$enableval], [enable_htslib=no] ) -AM_CONDITIONAL([ENABLE_HTS], [test "x$enable_hts" = "xyes"]) + +AC_ARG_ENABLE([libdeflate], + [AS_HELP_STRING([--enable-libdeflate], + [use libdeflate which might be needed by HTSLib])], + [enable_libdeflate=$enableval], [enable_libdeflate=no] +) + +AS_IF([test "x$enable_htslib" = xyes], [ + AX_PTHREAD([], + [AC_MSG_ERROR([Threads required for HTSLib but threads library not found])] + ) + AC_SEARCH_LIBS( + [gzopen], [z], [], + [AC_MSG_FAILURE(["ZLib required for HTSLib but not found"])] + ) + AS_IF([test "x$enable_libdeflate" = xyes], [ + AC_SEARCH_LIBS([libdeflate_deflate_compress], [deflate], + [AC_CHECK_LIB([hts], [hts_version], [], [ + AC_MSG_FAILURE([$hts_fail_msg])], [-pthread -lz -ldeflate])], + [AC_MSG_ERROR([$libdeflate_fail_msg])]) + ], + [AC_CHECK_LIB([hts], [hts_version], [], + [AC_MSG_FAILURE([$hts_fail_msg])], [-pthread -lz])]) +]) +AM_CONDITIONAL([ENABLE_HTSLIB], [test "x$enable_htslib" = "xyes"]) AC_CONFIG_FILES([Makefile]) @@ -53,7 +89,7 @@ AC_CONFIG_LINKS([ tests/md5sum.txt:tests/md5sum.txt tests/c_curve_input.hist:tests/data/c_curve_input.hist tests/lc_extrap_input.vals:tests/data/lc_extrap_input.vals -tests/gc_extrap_input.mr:tests/data/gc_extrap_input.mr +tests/gc_extrap_input.bed:tests/data/gc_extrap_input.bed ]) AC_OUTPUT diff --git a/data/LICENSE b/data/LICENSE new file mode 100644 index 0000000..0c0d820 --- /dev/null +++ b/data/LICENSE @@ -0,0 +1,159 @@ +LICENSES + +preseq + +Copyright (C) 2012-2025 Andrew D Smith and Timothy Daley + +This is free software: you can redistribute it and/or modify it under the +terms of the GNU General Public License as published by the Free Software +Foundation, either version 3 of the License, or (at your option) any later +version. + +This software is distributed in the hope that it will be useful, but WITHOUT +ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS +FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +details. + +======================================================================== + +Additional licenses/copyrights that apply to preseq pre-built binaries, which +link statically to Adler and Gailly's ZLib, to HTSlib, to Eric Biggers' +libdeflate, to Henry Schreiner's CLI11 and to Niels Lohmann's JSON library. + +======================================================================= +ZLib + +This copyright notice is taken from: +https://github.com/madler/zlib/blob/develop/LICENSE + +Copyright notice: + +(C) 1995-2024 Jean-loup Gailly and Mark Adler + +This software is provided 'as-is', without any express or implied warranty. +In no event will the authors be held liable for any damages arising from the +use of this software. + +Permission is granted to anyone to use this software for any purpose, +including commercial applications, and to alter it and redistribute it freely, +subject to the following restrictions: + +1. The origin of this software must not be misrepresented; you must not claim + that you wrote the original software. If you use this software in a + product, an acknowledgment in the product documentation would be + appreciated but is not required. +2. Altered source versions must be plainly marked as such, and must not be + misrepresented as being the original software. +3. This notice may not be removed or altered from any source distribution. + +Jean-loup Gailly Mark Adler +jloup@gzip.org madler@alumni.caltech.edu + +======================================================================= +libdeflate + +This copyright notice is taken from: +https://github.com/ebiggers/libdeflate/blob/master/COPYING + +Copyright 2016 Eric Biggers +Copyright 2024 Google LLC + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. + +======================================================================= +HTSlib + +This copyright notice is taken from: +https://github.com/samtools/htslib/blob/develop/LICENSE + +The MIT/Expat License + +Copyright (C) 2012-2025 Genome Research Ltd. + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. + +======================================================================== +JSON + +MIT License + +Copyright (c) 2013-2025 Niels Lohmann + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. + +======================================================================== +CLI11 + +CLI11 2.2 Copyright (c) 2017-2025 University of Cincinnati, developed by Henry +Schreiner under NSF AWARD 1414736. All rights reserved. + +Redistribution and use in source and binary forms of CLI11, with or without +modification, are permitted provided that the following conditions are met: + +1. Redistributions of source code must retain the above copyright notice, this + list of conditions and the following disclaimer. +2. Redistributions in binary form must reproduce the above copyright notice, + this list of conditions and the following disclaimer in the documentation + and/or other materials provided with the distribution. +3. Neither the name of the copyright holder nor the names of its contributors + may be used to endorse or promote products derived from this software without + specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND +ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED +WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR +ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES +(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; +LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON +ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT +(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS +SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/data/LICENSES.inc.in b/data/LICENSES.inc.in new file mode 100644 index 0000000..3c67a96 --- /dev/null +++ b/data/LICENSES.inc.in @@ -0,0 +1,3 @@ +static const char *license_text = R"( +@LICENSE_TEXT@ +)"; diff --git a/data/config.h.in b/data/config.h.in new file mode 100644 index 0000000..14cefd4 --- /dev/null +++ b/data/config.h.in @@ -0,0 +1,17 @@ +/* Copyright (C) 2025 Andrew D. Smith + * + * This file is part of preseq. + * + * preseq is free software: you can redistribute it and/or modify it under + * the terms of the GNU General Public License as published by the Free + * Software Foundation, either version 3 of the License, or (at your option) + * any later version. + * + * preseq is distributed in the hope that it will be useful, but WITHOUT ANY + * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS + * FOR A PARTICULAR PURPOSE. See the GNU General Public License for more + * details. + */ + +#define PROJECT_NAME "@PROJECT_NAME@" +#define VERSION "@PROJECT_VERSION@" diff --git a/documentation/README.md b/documentation/README.md index 2f1ba48..1a2cd90 100644 --- a/documentation/README.md +++ b/documentation/README.md @@ -1,11 +1,11 @@ # preseq documentation This is the (new) documentation for preseq that uses -[mkdocs](https://mkdocs.readthedocs.io) to generate readthedocs pages. -The public web verison of this documentation is available at -[preseq.readthedocs.io](https://preseq.readthedocs.io), but for users -who wish to see the documentation on a web browser offline, you can -build the documentation locally as described below. +[mkdocs](https://mkdocs.readthedocs.io) to generate readthedocs pages. The +public web verison of this documentation is available at +[preseq.readthedocs.io](https://preseq.readthedocs.io), but for users who wish +to see the documentation on a web browser offline, you can build the +documentation locally as described below. ### Dependencies diff --git a/iwyu.json b/iwyu.json new file mode 100644 index 0000000..2896ec4 --- /dev/null +++ b/iwyu.json @@ -0,0 +1,5 @@ +[ + { "include": ["", "private", "", "public"] }, + { "include": ["@[\"<]htslib/kstring.h[\">]", "private", "", "public"] }, + { "include": ["@[\"<]htslib/hts.h[\">]", "private", "", "public"] }, +] diff --git a/m4/ax_pthread.m4 b/m4/ax_pthread.m4 new file mode 100644 index 0000000..6cf2c04 --- /dev/null +++ b/m4/ax_pthread.m4 @@ -0,0 +1,522 @@ +# =========================================================================== +# https://www.gnu.org/software/autoconf-archive/ax_pthread.html +# =========================================================================== +# +# SYNOPSIS +# +# AX_PTHREAD([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]) +# +# DESCRIPTION +# +# This macro figures out how to build C programs using POSIX threads. It +# sets the PTHREAD_LIBS output variable to the threads library and linker +# flags, and the PTHREAD_CFLAGS output variable to any special C compiler +# flags that are needed. (The user can also force certain compiler +# flags/libs to be tested by setting these environment variables.) +# +# Also sets PTHREAD_CC and PTHREAD_CXX to any special C compiler that is +# needed for multi-threaded programs (defaults to the value of CC +# respectively CXX otherwise). (This is necessary on e.g. AIX to use the +# special cc_r/CC_r compiler alias.) +# +# NOTE: You are assumed to not only compile your program with these flags, +# but also to link with them as well. For example, you might link with +# $PTHREAD_CC $CFLAGS $PTHREAD_CFLAGS $LDFLAGS ... $PTHREAD_LIBS $LIBS +# $PTHREAD_CXX $CXXFLAGS $PTHREAD_CFLAGS $LDFLAGS ... $PTHREAD_LIBS $LIBS +# +# If you are only building threaded programs, you may wish to use these +# variables in your default LIBS, CFLAGS, and CC: +# +# LIBS="$PTHREAD_LIBS $LIBS" +# CFLAGS="$CFLAGS $PTHREAD_CFLAGS" +# CXXFLAGS="$CXXFLAGS $PTHREAD_CFLAGS" +# CC="$PTHREAD_CC" +# CXX="$PTHREAD_CXX" +# +# In addition, if the PTHREAD_CREATE_JOINABLE thread-attribute constant +# has a nonstandard name, this macro defines PTHREAD_CREATE_JOINABLE to +# that name (e.g. PTHREAD_CREATE_UNDETACHED on AIX). +# +# Also HAVE_PTHREAD_PRIO_INHERIT is defined if pthread is found and the +# PTHREAD_PRIO_INHERIT symbol is defined when compiling with +# PTHREAD_CFLAGS. +# +# ACTION-IF-FOUND is a list of shell commands to run if a threads library +# is found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it +# is not found. If ACTION-IF-FOUND is not specified, the default action +# will define HAVE_PTHREAD. +# +# Please let the authors know if this macro fails on any platform, or if +# you have any other suggestions or comments. This macro was based on work +# by SGJ on autoconf scripts for FFTW (http://www.fftw.org/) (with help +# from M. Frigo), as well as ac_pthread and hb_pthread macros posted by +# Alejandro Forero Cuervo to the autoconf macro repository. We are also +# grateful for the helpful feedback of numerous users. +# +# Updated for Autoconf 2.68 by Daniel Richard G. +# +# LICENSE +# +# Copyright (c) 2008 Steven G. Johnson +# Copyright (c) 2011 Daniel Richard G. +# Copyright (c) 2019 Marc Stevens +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU General Public License as published by the +# Free Software Foundation, either version 3 of the License, or (at your +# option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General +# Public License for more details. +# +# You should have received a copy of the GNU General Public License along +# with this program. If not, see . +# +# As a special exception, the respective Autoconf Macro's copyright owner +# gives unlimited permission to copy, distribute and modify the configure +# scripts that are the output of Autoconf when processing the Macro. You +# need not follow the terms of the GNU General Public License when using +# or distributing such scripts, even though portions of the text of the +# Macro appear in them. The GNU General Public License (GPL) does govern +# all other use of the material that constitutes the Autoconf Macro. +# +# This special exception to the GPL applies to versions of the Autoconf +# Macro released by the Autoconf Archive. When you make and distribute a +# modified version of the Autoconf Macro, you may extend this special +# exception to the GPL to apply to your modified version as well. + +#serial 31 + +AU_ALIAS([ACX_PTHREAD], [AX_PTHREAD]) +AC_DEFUN([AX_PTHREAD], [ +AC_REQUIRE([AC_CANONICAL_HOST]) +AC_REQUIRE([AC_PROG_CC]) +AC_REQUIRE([AC_PROG_SED]) +AC_LANG_PUSH([C]) +ax_pthread_ok=no + +# We used to check for pthread.h first, but this fails if pthread.h +# requires special compiler flags (e.g. on Tru64 or Sequent). +# It gets checked for in the link test anyway. + +# First of all, check if the user has set any of the PTHREAD_LIBS, +# etcetera environment variables, and if threads linking works using +# them: +if test "x$PTHREAD_CFLAGS$PTHREAD_LIBS" != "x"; then + ax_pthread_save_CC="$CC" + ax_pthread_save_CFLAGS="$CFLAGS" + ax_pthread_save_LIBS="$LIBS" + AS_IF([test "x$PTHREAD_CC" != "x"], [CC="$PTHREAD_CC"]) + AS_IF([test "x$PTHREAD_CXX" != "x"], [CXX="$PTHREAD_CXX"]) + CFLAGS="$CFLAGS $PTHREAD_CFLAGS" + LIBS="$PTHREAD_LIBS $LIBS" + AC_MSG_CHECKING([for pthread_join using $CC $PTHREAD_CFLAGS $PTHREAD_LIBS]) + AC_LINK_IFELSE([AC_LANG_CALL([], [pthread_join])], [ax_pthread_ok=yes]) + AC_MSG_RESULT([$ax_pthread_ok]) + if test "x$ax_pthread_ok" = "xno"; then + PTHREAD_LIBS="" + PTHREAD_CFLAGS="" + fi + CC="$ax_pthread_save_CC" + CFLAGS="$ax_pthread_save_CFLAGS" + LIBS="$ax_pthread_save_LIBS" +fi + +# We must check for the threads library under a number of different +# names; the ordering is very important because some systems +# (e.g. DEC) have both -lpthread and -lpthreads, where one of the +# libraries is broken (non-POSIX). + +# Create a list of thread flags to try. Items with a "," contain both +# C compiler flags (before ",") and linker flags (after ","). Other items +# starting with a "-" are C compiler flags, and remaining items are +# library names, except for "none" which indicates that we try without +# any flags at all, and "pthread-config" which is a program returning +# the flags for the Pth emulation library. + +ax_pthread_flags="pthreads none -Kthread -pthread -pthreads -mthreads pthread --thread-safe -mt pthread-config" + +# The ordering *is* (sometimes) important. Some notes on the +# individual items follow: + +# pthreads: AIX (must check this before -lpthread) +# none: in case threads are in libc; should be tried before -Kthread and +# other compiler flags to prevent continual compiler warnings +# -Kthread: Sequent (threads in libc, but -Kthread needed for pthread.h) +# -pthread: Linux/gcc (kernel threads), BSD/gcc (userland threads), Tru64 +# (Note: HP C rejects this with "bad form for `-t' option") +# -pthreads: Solaris/gcc (Note: HP C also rejects) +# -mt: Sun Workshop C (may only link SunOS threads [-lthread], but it +# doesn't hurt to check since this sometimes defines pthreads and +# -D_REENTRANT too), HP C (must be checked before -lpthread, which +# is present but should not be used directly; and before -mthreads, +# because the compiler interprets this as "-mt" + "-hreads") +# -mthreads: Mingw32/gcc, Lynx/gcc +# pthread: Linux, etcetera +# --thread-safe: KAI C++ +# pthread-config: use pthread-config program (for GNU Pth library) + +case $host_os in + + freebsd*) + + # -kthread: FreeBSD kernel threads (preferred to -pthread since SMP-able) + # lthread: LinuxThreads port on FreeBSD (also preferred to -pthread) + + ax_pthread_flags="-kthread lthread $ax_pthread_flags" + ;; + + hpux*) + + # From the cc(1) man page: "[-mt] Sets various -D flags to enable + # multi-threading and also sets -lpthread." + + ax_pthread_flags="-mt -pthread pthread $ax_pthread_flags" + ;; + + openedition*) + + # IBM z/OS requires a feature-test macro to be defined in order to + # enable POSIX threads at all, so give the user a hint if this is + # not set. (We don't define these ourselves, as they can affect + # other portions of the system API in unpredictable ways.) + + AC_EGREP_CPP([AX_PTHREAD_ZOS_MISSING], + [ +# if !defined(_OPEN_THREADS) && !defined(_UNIX03_THREADS) + AX_PTHREAD_ZOS_MISSING +# endif + ], + [AC_MSG_WARN([IBM z/OS requires -D_OPEN_THREADS or -D_UNIX03_THREADS to enable pthreads support.])]) + ;; + + solaris*) + + # On Solaris (at least, for some versions), libc contains stubbed + # (non-functional) versions of the pthreads routines, so link-based + # tests will erroneously succeed. (N.B.: The stubs are missing + # pthread_cleanup_push, or rather a function called by this macro, + # so we could check for that, but who knows whether they'll stub + # that too in a future libc.) So we'll check first for the + # standard Solaris way of linking pthreads (-mt -lpthread). + + ax_pthread_flags="-mt,-lpthread pthread $ax_pthread_flags" + ;; +esac + +# Are we compiling with Clang? + +AC_CACHE_CHECK([whether $CC is Clang], + [ax_cv_PTHREAD_CLANG], + [ax_cv_PTHREAD_CLANG=no + # Note that Autoconf sets GCC=yes for Clang as well as GCC + if test "x$GCC" = "xyes"; then + AC_EGREP_CPP([AX_PTHREAD_CC_IS_CLANG], + [/* Note: Clang 2.7 lacks __clang_[a-z]+__ */ +# if defined(__clang__) && defined(__llvm__) + AX_PTHREAD_CC_IS_CLANG +# endif + ], + [ax_cv_PTHREAD_CLANG=yes]) + fi + ]) +ax_pthread_clang="$ax_cv_PTHREAD_CLANG" + + +# GCC generally uses -pthread, or -pthreads on some platforms (e.g. SPARC) + +# Note that for GCC and Clang -pthread generally implies -lpthread, +# except when -nostdlib is passed. +# This is problematic using libtool to build C++ shared libraries with pthread: +# [1] https://gcc.gnu.org/bugzilla/show_bug.cgi?id=25460 +# [2] https://bugzilla.redhat.com/show_bug.cgi?id=661333 +# [3] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=468555 +# To solve this, first try -pthread together with -lpthread for GCC + +AS_IF([test "x$GCC" = "xyes"], + [ax_pthread_flags="-pthread,-lpthread -pthread -pthreads $ax_pthread_flags"]) + +# Clang takes -pthread (never supported any other flag), but we'll try with -lpthread first + +AS_IF([test "x$ax_pthread_clang" = "xyes"], + [ax_pthread_flags="-pthread,-lpthread -pthread"]) + + +# The presence of a feature test macro requesting re-entrant function +# definitions is, on some systems, a strong hint that pthreads support is +# correctly enabled + +case $host_os in + darwin* | hpux* | linux* | osf* | solaris*) + ax_pthread_check_macro="_REENTRANT" + ;; + + aix*) + ax_pthread_check_macro="_THREAD_SAFE" + ;; + + *) + ax_pthread_check_macro="--" + ;; +esac +AS_IF([test "x$ax_pthread_check_macro" = "x--"], + [ax_pthread_check_cond=0], + [ax_pthread_check_cond="!defined($ax_pthread_check_macro)"]) + + +if test "x$ax_pthread_ok" = "xno"; then +for ax_pthread_try_flag in $ax_pthread_flags; do + + case $ax_pthread_try_flag in + none) + AC_MSG_CHECKING([whether pthreads work without any flags]) + ;; + + *,*) + PTHREAD_CFLAGS=`echo $ax_pthread_try_flag | sed "s/^\(.*\),\(.*\)$/\1/"` + PTHREAD_LIBS=`echo $ax_pthread_try_flag | sed "s/^\(.*\),\(.*\)$/\2/"` + AC_MSG_CHECKING([whether pthreads work with "$PTHREAD_CFLAGS" and "$PTHREAD_LIBS"]) + ;; + + -*) + AC_MSG_CHECKING([whether pthreads work with $ax_pthread_try_flag]) + PTHREAD_CFLAGS="$ax_pthread_try_flag" + ;; + + pthread-config) + AC_CHECK_PROG([ax_pthread_config], [pthread-config], [yes], [no]) + AS_IF([test "x$ax_pthread_config" = "xno"], [continue]) + PTHREAD_CFLAGS="`pthread-config --cflags`" + PTHREAD_LIBS="`pthread-config --ldflags` `pthread-config --libs`" + ;; + + *) + AC_MSG_CHECKING([for the pthreads library -l$ax_pthread_try_flag]) + PTHREAD_LIBS="-l$ax_pthread_try_flag" + ;; + esac + + ax_pthread_save_CFLAGS="$CFLAGS" + ax_pthread_save_LIBS="$LIBS" + CFLAGS="$CFLAGS $PTHREAD_CFLAGS" + LIBS="$PTHREAD_LIBS $LIBS" + + # Check for various functions. We must include pthread.h, + # since some functions may be macros. (On the Sequent, we + # need a special flag -Kthread to make this header compile.) + # We check for pthread_join because it is in -lpthread on IRIX + # while pthread_create is in libc. We check for pthread_attr_init + # due to DEC craziness with -lpthreads. We check for + # pthread_cleanup_push because it is one of the few pthread + # functions on Solaris that doesn't have a non-functional libc stub. + # We try pthread_create on general principles. + + AC_LINK_IFELSE([AC_LANG_PROGRAM([#include +# if $ax_pthread_check_cond +# error "$ax_pthread_check_macro must be defined" +# endif + static void *some_global = NULL; + static void routine(void *a) + { + /* To avoid any unused-parameter or + unused-but-set-parameter warning. */ + some_global = a; + } + static void *start_routine(void *a) { return a; }], + [pthread_t th; pthread_attr_t attr; + pthread_create(&th, 0, start_routine, 0); + pthread_join(th, 0); + pthread_attr_init(&attr); + pthread_cleanup_push(routine, 0); + pthread_cleanup_pop(0) /* ; */])], + [ax_pthread_ok=yes], + []) + + CFLAGS="$ax_pthread_save_CFLAGS" + LIBS="$ax_pthread_save_LIBS" + + AC_MSG_RESULT([$ax_pthread_ok]) + AS_IF([test "x$ax_pthread_ok" = "xyes"], [break]) + + PTHREAD_LIBS="" + PTHREAD_CFLAGS="" +done +fi + + +# Clang needs special handling, because older versions handle the -pthread +# option in a rather... idiosyncratic way + +if test "x$ax_pthread_clang" = "xyes"; then + + # Clang takes -pthread; it has never supported any other flag + + # (Note 1: This will need to be revisited if a system that Clang + # supports has POSIX threads in a separate library. This tends not + # to be the way of modern systems, but it's conceivable.) + + # (Note 2: On some systems, notably Darwin, -pthread is not needed + # to get POSIX threads support; the API is always present and + # active. We could reasonably leave PTHREAD_CFLAGS empty. But + # -pthread does define _REENTRANT, and while the Darwin headers + # ignore this macro, third-party headers might not.) + + # However, older versions of Clang make a point of warning the user + # that, in an invocation where only linking and no compilation is + # taking place, the -pthread option has no effect ("argument unused + # during compilation"). They expect -pthread to be passed in only + # when source code is being compiled. + # + # Problem is, this is at odds with the way Automake and most other + # C build frameworks function, which is that the same flags used in + # compilation (CFLAGS) are also used in linking. Many systems + # supported by AX_PTHREAD require exactly this for POSIX threads + # support, and in fact it is often not straightforward to specify a + # flag that is used only in the compilation phase and not in + # linking. Such a scenario is extremely rare in practice. + # + # Even though use of the -pthread flag in linking would only print + # a warning, this can be a nuisance for well-run software projects + # that build with -Werror. So if the active version of Clang has + # this misfeature, we search for an option to squash it. + + AC_CACHE_CHECK([whether Clang needs flag to prevent "argument unused" warning when linking with -pthread], + [ax_cv_PTHREAD_CLANG_NO_WARN_FLAG], + [ax_cv_PTHREAD_CLANG_NO_WARN_FLAG=unknown + # Create an alternate version of $ac_link that compiles and + # links in two steps (.c -> .o, .o -> exe) instead of one + # (.c -> exe), because the warning occurs only in the second + # step + ax_pthread_save_ac_link="$ac_link" + ax_pthread_sed='s/conftest\.\$ac_ext/conftest.$ac_objext/g' + ax_pthread_link_step=`AS_ECHO(["$ac_link"]) | sed "$ax_pthread_sed"` + ax_pthread_2step_ac_link="($ac_compile) && (echo ==== >&5) && ($ax_pthread_link_step)" + ax_pthread_save_CFLAGS="$CFLAGS" + for ax_pthread_try in '' -Qunused-arguments -Wno-unused-command-line-argument unknown; do + AS_IF([test "x$ax_pthread_try" = "xunknown"], [break]) + CFLAGS="-Werror -Wunknown-warning-option $ax_pthread_try -pthread $ax_pthread_save_CFLAGS" + ac_link="$ax_pthread_save_ac_link" + AC_LINK_IFELSE([AC_LANG_SOURCE([[int main(void){return 0;}]])], + [ac_link="$ax_pthread_2step_ac_link" + AC_LINK_IFELSE([AC_LANG_SOURCE([[int main(void){return 0;}]])], + [break]) + ]) + done + ac_link="$ax_pthread_save_ac_link" + CFLAGS="$ax_pthread_save_CFLAGS" + AS_IF([test "x$ax_pthread_try" = "x"], [ax_pthread_try=no]) + ax_cv_PTHREAD_CLANG_NO_WARN_FLAG="$ax_pthread_try" + ]) + + case "$ax_cv_PTHREAD_CLANG_NO_WARN_FLAG" in + no | unknown) ;; + *) PTHREAD_CFLAGS="$ax_cv_PTHREAD_CLANG_NO_WARN_FLAG $PTHREAD_CFLAGS" ;; + esac + +fi # $ax_pthread_clang = yes + + + +# Various other checks: +if test "x$ax_pthread_ok" = "xyes"; then + ax_pthread_save_CFLAGS="$CFLAGS" + ax_pthread_save_LIBS="$LIBS" + CFLAGS="$CFLAGS $PTHREAD_CFLAGS" + LIBS="$PTHREAD_LIBS $LIBS" + + # Detect AIX lossage: JOINABLE attribute is called UNDETACHED. + AC_CACHE_CHECK([for joinable pthread attribute], + [ax_cv_PTHREAD_JOINABLE_ATTR], + [ax_cv_PTHREAD_JOINABLE_ATTR=unknown + for ax_pthread_attr in PTHREAD_CREATE_JOINABLE PTHREAD_CREATE_UNDETACHED; do + AC_LINK_IFELSE([AC_LANG_PROGRAM([#include ], + [int attr = $ax_pthread_attr; return attr /* ; */])], + [ax_cv_PTHREAD_JOINABLE_ATTR=$ax_pthread_attr; break], + []) + done + ]) + AS_IF([test "x$ax_cv_PTHREAD_JOINABLE_ATTR" != "xunknown" && \ + test "x$ax_cv_PTHREAD_JOINABLE_ATTR" != "xPTHREAD_CREATE_JOINABLE" && \ + test "x$ax_pthread_joinable_attr_defined" != "xyes"], + [AC_DEFINE_UNQUOTED([PTHREAD_CREATE_JOINABLE], + [$ax_cv_PTHREAD_JOINABLE_ATTR], + [Define to necessary symbol if this constant + uses a non-standard name on your system.]) + ax_pthread_joinable_attr_defined=yes + ]) + + AC_CACHE_CHECK([whether more special flags are required for pthreads], + [ax_cv_PTHREAD_SPECIAL_FLAGS], + [ax_cv_PTHREAD_SPECIAL_FLAGS=no + case $host_os in + solaris*) + ax_cv_PTHREAD_SPECIAL_FLAGS="-D_POSIX_PTHREAD_SEMANTICS" + ;; + esac + ]) + AS_IF([test "x$ax_cv_PTHREAD_SPECIAL_FLAGS" != "xno" && \ + test "x$ax_pthread_special_flags_added" != "xyes"], + [PTHREAD_CFLAGS="$ax_cv_PTHREAD_SPECIAL_FLAGS $PTHREAD_CFLAGS" + ax_pthread_special_flags_added=yes]) + + AC_CACHE_CHECK([for PTHREAD_PRIO_INHERIT], + [ax_cv_PTHREAD_PRIO_INHERIT], + [AC_LINK_IFELSE([AC_LANG_PROGRAM([[#include ]], + [[int i = PTHREAD_PRIO_INHERIT; + return i;]])], + [ax_cv_PTHREAD_PRIO_INHERIT=yes], + [ax_cv_PTHREAD_PRIO_INHERIT=no]) + ]) + AS_IF([test "x$ax_cv_PTHREAD_PRIO_INHERIT" = "xyes" && \ + test "x$ax_pthread_prio_inherit_defined" != "xyes"], + [AC_DEFINE([HAVE_PTHREAD_PRIO_INHERIT], [1], [Have PTHREAD_PRIO_INHERIT.]) + ax_pthread_prio_inherit_defined=yes + ]) + + CFLAGS="$ax_pthread_save_CFLAGS" + LIBS="$ax_pthread_save_LIBS" + + # More AIX lossage: compile with *_r variant + if test "x$GCC" != "xyes"; then + case $host_os in + aix*) + AS_CASE(["x/$CC"], + [x*/c89|x*/c89_128|x*/c99|x*/c99_128|x*/cc|x*/cc128|x*/xlc|x*/xlc_v6|x*/xlc128|x*/xlc128_v6], + [#handle absolute path differently from PATH based program lookup + AS_CASE(["x$CC"], + [x/*], + [ + AS_IF([AS_EXECUTABLE_P([${CC}_r])],[PTHREAD_CC="${CC}_r"]) + AS_IF([test "x${CXX}" != "x"], [AS_IF([AS_EXECUTABLE_P([${CXX}_r])],[PTHREAD_CXX="${CXX}_r"])]) + ], + [ + AC_CHECK_PROGS([PTHREAD_CC],[${CC}_r],[$CC]) + AS_IF([test "x${CXX}" != "x"], [AC_CHECK_PROGS([PTHREAD_CXX],[${CXX}_r],[$CXX])]) + ] + ) + ]) + ;; + esac + fi +fi + +test -n "$PTHREAD_CC" || PTHREAD_CC="$CC" +test -n "$PTHREAD_CXX" || PTHREAD_CXX="$CXX" + +AC_SUBST([PTHREAD_LIBS]) +AC_SUBST([PTHREAD_CFLAGS]) +AC_SUBST([PTHREAD_CC]) +AC_SUBST([PTHREAD_CXX]) + +# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: +if test "x$ax_pthread_ok" = "xyes"; then + ifelse([$1],,[AC_DEFINE([HAVE_PTHREAD],[1],[Define if you have POSIX threads libraries and header files.])],[$1]) + : +else + ax_pthread_ok=no + $2 +fi +AC_LANG_POP +])dnl AX_PTHREAD diff --git a/src/CLI11/CLI11.hpp b/src/CLI11/CLI11.hpp new file mode 100644 index 0000000..8a5b4c5 --- /dev/null +++ b/src/CLI11/CLI11.hpp @@ -0,0 +1,10998 @@ +// CLI11: Version 2.4.2 +// Originally designed by Henry Schreiner +// https://github.com/CLIUtils/CLI11 +// +// This is a standalone header file generated by MakeSingleHeader.py in CLI11/scripts +// from: v2.4.2 +// +// CLI11 2.4.2 Copyright (c) 2017-2024 University of Cincinnati, developed by Henry +// Schreiner under NSF AWARD 1414736. All rights reserved. +// +// Redistribution and use in source and binary forms of CLI11, with or without +// modification, are permitted provided that the following conditions are met: +// +// 1. Redistributions of source code must retain the above copyright notice, this +// list of conditions and the following disclaimer. +// 2. Redistributions in binary form must reproduce the above copyright notice, +// this list of conditions and the following disclaimer in the documentation +// and/or other materials provided with the distribution. +// 3. Neither the name of the copyright holder nor the names of its contributors +// may be used to endorse or promote products derived from this software without +// specific prior written permission. +// +// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND +// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED +// WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +// DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR +// ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES +// (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; +// LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON +// ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT +// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS +// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +#pragma once + +// Standard combined includes: +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + + +#define CLI11_VERSION_MAJOR 2 +#define CLI11_VERSION_MINOR 4 +#define CLI11_VERSION_PATCH 2 +#define CLI11_VERSION "2.4.2" + + + + +// The following version macro is very similar to the one in pybind11 +#if !(defined(_MSC_VER) && __cplusplus == 199711L) && !defined(__INTEL_COMPILER) +#if __cplusplus >= 201402L +#define CLI11_CPP14 +#if __cplusplus >= 201703L +#define CLI11_CPP17 +#if __cplusplus > 201703L +#define CLI11_CPP20 +#endif +#endif +#endif +#elif defined(_MSC_VER) && __cplusplus == 199711L +// MSVC sets _MSVC_LANG rather than __cplusplus (supposedly until the standard is fully implemented) +// Unless you use the /Zc:__cplusplus flag on Visual Studio 2017 15.7 Preview 3 or newer +#if _MSVC_LANG >= 201402L +#define CLI11_CPP14 +#if _MSVC_LANG > 201402L && _MSC_VER >= 1910 +#define CLI11_CPP17 +#if _MSVC_LANG > 201703L && _MSC_VER >= 1910 +#define CLI11_CPP20 +#endif +#endif +#endif +#endif + +#if defined(CLI11_CPP14) +#define CLI11_DEPRECATED(reason) [[deprecated(reason)]] +#elif defined(_MSC_VER) +#define CLI11_DEPRECATED(reason) __declspec(deprecated(reason)) +#else +#define CLI11_DEPRECATED(reason) __attribute__((deprecated(reason))) +#endif + +// GCC < 10 doesn't ignore this in unevaluated contexts +#if !defined(CLI11_CPP17) || \ + (defined(__GNUC__) && !defined(__llvm__) && !defined(__INTEL_COMPILER) && __GNUC__ < 10 && __GNUC__ > 4) +#define CLI11_NODISCARD +#else +#define CLI11_NODISCARD [[nodiscard]] +#endif + +/** detection of rtti */ +#ifndef CLI11_USE_STATIC_RTTI +#if(defined(_HAS_STATIC_RTTI) && _HAS_STATIC_RTTI) +#define CLI11_USE_STATIC_RTTI 1 +#elif defined(__cpp_rtti) +#if(defined(_CPPRTTI) && _CPPRTTI == 0) +#define CLI11_USE_STATIC_RTTI 1 +#else +#define CLI11_USE_STATIC_RTTI 0 +#endif +#elif(defined(__GCC_RTTI) && __GXX_RTTI) +#define CLI11_USE_STATIC_RTTI 0 +#else +#define CLI11_USE_STATIC_RTTI 1 +#endif +#endif + +/** availability */ +#if defined CLI11_CPP17 && defined __has_include && !defined CLI11_HAS_FILESYSTEM +#if __has_include() +// Filesystem cannot be used if targeting macOS < 10.15 +#if defined __MAC_OS_X_VERSION_MIN_REQUIRED && __MAC_OS_X_VERSION_MIN_REQUIRED < 101500 +#define CLI11_HAS_FILESYSTEM 0 +#elif defined(__wasi__) +// As of wasi-sdk-14, filesystem is not implemented +#define CLI11_HAS_FILESYSTEM 0 +#else +#include +#if defined __cpp_lib_filesystem && __cpp_lib_filesystem >= 201703 +#if defined _GLIBCXX_RELEASE && _GLIBCXX_RELEASE >= 9 +#define CLI11_HAS_FILESYSTEM 1 +#elif defined(__GLIBCXX__) +// if we are using gcc and Version <9 default to no filesystem +#define CLI11_HAS_FILESYSTEM 0 +#else +#define CLI11_HAS_FILESYSTEM 1 +#endif +#else +#define CLI11_HAS_FILESYSTEM 0 +#endif +#endif +#endif +#endif + +/** availability */ +#if defined(__GNUC__) && !defined(__llvm__) && !defined(__INTEL_COMPILER) && __GNUC__ < 5 +#define CLI11_HAS_CODECVT 0 +#else +#define CLI11_HAS_CODECVT 1 +#include +#endif + +/** disable deprecations */ +#if defined(__GNUC__) // GCC or clang +#define CLI11_DIAGNOSTIC_PUSH _Pragma("GCC diagnostic push") +#define CLI11_DIAGNOSTIC_POP _Pragma("GCC diagnostic pop") + +#define CLI11_DIAGNOSTIC_IGNORE_DEPRECATED _Pragma("GCC diagnostic ignored \"-Wdeprecated-declarations\"") + +#elif defined(_MSC_VER) +#define CLI11_DIAGNOSTIC_PUSH __pragma(warning(push)) +#define CLI11_DIAGNOSTIC_POP __pragma(warning(pop)) + +#define CLI11_DIAGNOSTIC_IGNORE_DEPRECATED __pragma(warning(disable : 4996)) + +#else +#define CLI11_DIAGNOSTIC_PUSH +#define CLI11_DIAGNOSTIC_POP + +#define CLI11_DIAGNOSTIC_IGNORE_DEPRECATED + +#endif + +/** Inline macro **/ +#ifdef CLI11_COMPILE +#define CLI11_INLINE +#else +#define CLI11_INLINE inline +#endif + + + +#if defined CLI11_HAS_FILESYSTEM && CLI11_HAS_FILESYSTEM > 0 +#include // NOLINT(build/include) +#else +#include +#include +#endif + + + + +#ifdef CLI11_CPP17 +#include +#endif // CLI11_CPP17 + +#if defined CLI11_HAS_FILESYSTEM && CLI11_HAS_FILESYSTEM > 0 +#include +#include // NOLINT(build/include) +#endif // CLI11_HAS_FILESYSTEM + + + +#if defined(_WIN32) +#if !(defined(_AMD64_) || defined(_X86_) || defined(_ARM_)) +#if defined(__amd64__) || defined(__amd64) || defined(__x86_64__) || defined(__x86_64) || defined(_M_X64) || \ + defined(_M_AMD64) +#define _AMD64_ +#elif defined(i386) || defined(__i386) || defined(__i386__) || defined(__i386__) || defined(_M_IX86) +#define _X86_ +#elif defined(__arm__) || defined(_M_ARM) || defined(_M_ARMT) +#define _ARM_ +#elif defined(__aarch64__) || defined(_M_ARM64) +#define _ARM64_ +#elif defined(_M_ARM64EC) +#define _ARM64EC_ +#endif +#endif + +// first +#ifndef NOMINMAX +// if NOMINMAX is already defined we don't want to mess with that either way +#define NOMINMAX +#include +#undef NOMINMAX +#else +#include +#endif + +// second +#include +// third +#include +#include +#endif + + +namespace CLI { + + +/// Convert a wide string to a narrow string. +CLI11_INLINE std::string narrow(const std::wstring &str); +CLI11_INLINE std::string narrow(const wchar_t *str); +CLI11_INLINE std::string narrow(const wchar_t *str, std::size_t size); + +/// Convert a narrow string to a wide string. +CLI11_INLINE std::wstring widen(const std::string &str); +CLI11_INLINE std::wstring widen(const char *str); +CLI11_INLINE std::wstring widen(const char *str, std::size_t size); + +#ifdef CLI11_CPP17 +CLI11_INLINE std::string narrow(std::wstring_view str); +CLI11_INLINE std::wstring widen(std::string_view str); +#endif // CLI11_CPP17 + +#if defined CLI11_HAS_FILESYSTEM && CLI11_HAS_FILESYSTEM > 0 +/// Convert a char-string to a native path correctly. +CLI11_INLINE std::filesystem::path to_path(std::string_view str); +#endif // CLI11_HAS_FILESYSTEM + + + + +namespace detail { + +#if !CLI11_HAS_CODECVT +/// Attempt to set one of the acceptable unicode locales for conversion +CLI11_INLINE void set_unicode_locale() { + static const std::array unicode_locales{{"C.UTF-8", "en_US.UTF-8", ".UTF-8"}}; + + for(const auto &locale_name : unicode_locales) { + if(std::setlocale(LC_ALL, locale_name) != nullptr) { + return; + } + } + throw std::runtime_error("CLI::narrow: could not set locale to C.UTF-8"); +} + +template struct scope_guard_t { + F closure; + + explicit scope_guard_t(F closure_) : closure(closure_) {} + ~scope_guard_t() { closure(); } +}; + +template CLI11_NODISCARD CLI11_INLINE scope_guard_t scope_guard(F &&closure) { + return scope_guard_t{std::forward(closure)}; +} + +#endif // !CLI11_HAS_CODECVT + +CLI11_DIAGNOSTIC_PUSH +CLI11_DIAGNOSTIC_IGNORE_DEPRECATED + +CLI11_INLINE std::string narrow_impl(const wchar_t *str, std::size_t str_size) { +#if CLI11_HAS_CODECVT +#ifdef _WIN32 + return std::wstring_convert>().to_bytes(str, str + str_size); + +#else + return std::wstring_convert>().to_bytes(str, str + str_size); + +#endif // _WIN32 +#else // CLI11_HAS_CODECVT + (void)str_size; + std::mbstate_t state = std::mbstate_t(); + const wchar_t *it = str; + + std::string old_locale = std::setlocale(LC_ALL, nullptr); + auto sg = scope_guard([&] { std::setlocale(LC_ALL, old_locale.c_str()); }); + set_unicode_locale(); + + std::size_t new_size = std::wcsrtombs(nullptr, &it, 0, &state); + if(new_size == static_cast(-1)) { + throw std::runtime_error("CLI::narrow: conversion error in std::wcsrtombs at offset " + + std::to_string(it - str)); + } + std::string result(new_size, '\0'); + std::wcsrtombs(const_cast(result.data()), &str, new_size, &state); + + return result; + +#endif // CLI11_HAS_CODECVT +} + +CLI11_INLINE std::wstring widen_impl(const char *str, std::size_t str_size) { +#if CLI11_HAS_CODECVT +#ifdef _WIN32 + return std::wstring_convert>().from_bytes(str, str + str_size); + +#else + return std::wstring_convert>().from_bytes(str, str + str_size); + +#endif // _WIN32 +#else // CLI11_HAS_CODECVT + (void)str_size; + std::mbstate_t state = std::mbstate_t(); + const char *it = str; + + std::string old_locale = std::setlocale(LC_ALL, nullptr); + auto sg = scope_guard([&] { std::setlocale(LC_ALL, old_locale.c_str()); }); + set_unicode_locale(); + + std::size_t new_size = std::mbsrtowcs(nullptr, &it, 0, &state); + if(new_size == static_cast(-1)) { + throw std::runtime_error("CLI::widen: conversion error in std::mbsrtowcs at offset " + + std::to_string(it - str)); + } + std::wstring result(new_size, L'\0'); + std::mbsrtowcs(const_cast(result.data()), &str, new_size, &state); + + return result; + +#endif // CLI11_HAS_CODECVT +} + +CLI11_DIAGNOSTIC_POP + +} // namespace detail + +CLI11_INLINE std::string narrow(const wchar_t *str, std::size_t str_size) { return detail::narrow_impl(str, str_size); } +CLI11_INLINE std::string narrow(const std::wstring &str) { return detail::narrow_impl(str.data(), str.size()); } +// Flawfinder: ignore +CLI11_INLINE std::string narrow(const wchar_t *str) { return detail::narrow_impl(str, std::wcslen(str)); } + +CLI11_INLINE std::wstring widen(const char *str, std::size_t str_size) { return detail::widen_impl(str, str_size); } +CLI11_INLINE std::wstring widen(const std::string &str) { return detail::widen_impl(str.data(), str.size()); } +// Flawfinder: ignore +CLI11_INLINE std::wstring widen(const char *str) { return detail::widen_impl(str, std::strlen(str)); } + +#ifdef CLI11_CPP17 +CLI11_INLINE std::string narrow(std::wstring_view str) { return detail::narrow_impl(str.data(), str.size()); } +CLI11_INLINE std::wstring widen(std::string_view str) { return detail::widen_impl(str.data(), str.size()); } +#endif // CLI11_CPP17 + +#if defined CLI11_HAS_FILESYSTEM && CLI11_HAS_FILESYSTEM > 0 +CLI11_INLINE std::filesystem::path to_path(std::string_view str) { + return std::filesystem::path{ +#ifdef _WIN32 + widen(str) +#else + str +#endif // _WIN32 + }; +} +#endif // CLI11_HAS_FILESYSTEM + + + + +namespace detail { +#ifdef _WIN32 +/// Decode and return UTF-8 argv from GetCommandLineW. +CLI11_INLINE std::vector compute_win32_argv(); +#endif +} // namespace detail + + + +namespace detail { + +#ifdef _WIN32 +CLI11_INLINE std::vector compute_win32_argv() { + std::vector result; + int argc = 0; + + auto deleter = [](wchar_t **ptr) { LocalFree(ptr); }; + // NOLINTBEGIN(*-avoid-c-arrays) + auto wargv = std::unique_ptr(CommandLineToArgvW(GetCommandLineW(), &argc), deleter); + // NOLINTEND(*-avoid-c-arrays) + + if(wargv == nullptr) { + throw std::runtime_error("CommandLineToArgvW failed with code " + std::to_string(GetLastError())); + } + + result.reserve(static_cast(argc)); + for(size_t i = 0; i < static_cast(argc); ++i) { + result.push_back(narrow(wargv[i])); + } + + return result; +} +#endif + +} // namespace detail + + + + +/// Include the items in this namespace to get free conversion of enums to/from streams. +/// (This is available inside CLI as well, so CLI11 will use this without a using statement). +namespace enums { + +/// output streaming for enumerations +template ::value>::type> +std::ostream &operator<<(std::ostream &in, const T &item) { + // make sure this is out of the detail namespace otherwise it won't be found when needed + return in << static_cast::type>(item); +} + +} // namespace enums + +/// Export to CLI namespace +using enums::operator<<; + +namespace detail { +/// a constant defining an expected max vector size defined to be a big number that could be multiplied by 4 and not +/// produce overflow for some expected uses +constexpr int expected_max_vector_size{1 << 29}; +// Based on http://stackoverflow.com/questions/236129/split-a-string-in-c +/// Split a string by a delim +CLI11_INLINE std::vector split(const std::string &s, char delim); + +/// Simple function to join a string +template std::string join(const T &v, std::string delim = ",") { + std::ostringstream s; + auto beg = std::begin(v); + auto end = std::end(v); + if(beg != end) + s << *beg++; + while(beg != end) { + s << delim << *beg++; + } + return s.str(); +} + +/// Simple function to join a string from processed elements +template ::value>::type> +std::string join(const T &v, Callable func, std::string delim = ",") { + std::ostringstream s; + auto beg = std::begin(v); + auto end = std::end(v); + auto loc = s.tellp(); + while(beg != end) { + auto nloc = s.tellp(); + if(nloc > loc) { + s << delim; + loc = nloc; + } + s << func(*beg++); + } + return s.str(); +} + +/// Join a string in reverse order +template std::string rjoin(const T &v, std::string delim = ",") { + std::ostringstream s; + for(std::size_t start = 0; start < v.size(); start++) { + if(start > 0) + s << delim; + s << v[v.size() - start - 1]; + } + return s.str(); +} + +// Based roughly on http://stackoverflow.com/questions/25829143/c-trim-whitespace-from-a-string + +/// Trim whitespace from left of string +CLI11_INLINE std::string <rim(std::string &str); + +/// Trim anything from left of string +CLI11_INLINE std::string <rim(std::string &str, const std::string &filter); + +/// Trim whitespace from right of string +CLI11_INLINE std::string &rtrim(std::string &str); + +/// Trim anything from right of string +CLI11_INLINE std::string &rtrim(std::string &str, const std::string &filter); + +/// Trim whitespace from string +inline std::string &trim(std::string &str) { return ltrim(rtrim(str)); } + +/// Trim anything from string +inline std::string &trim(std::string &str, const std::string filter) { return ltrim(rtrim(str, filter), filter); } + +/// Make a copy of the string and then trim it +inline std::string trim_copy(const std::string &str) { + std::string s = str; + return trim(s); +} + +/// remove quotes at the front and back of a string either '"' or '\'' +CLI11_INLINE std::string &remove_quotes(std::string &str); + +/// remove quotes from all elements of a string vector and process escaped components +CLI11_INLINE void remove_quotes(std::vector &args); + +/// Add a leader to the beginning of all new lines (nothing is added +/// at the start of the first line). `"; "` would be for ini files +/// +/// Can't use Regex, or this would be a subs. +CLI11_INLINE std::string fix_newlines(const std::string &leader, std::string input); + +/// Make a copy of the string and then trim it, any filter string can be used (any char in string is filtered) +inline std::string trim_copy(const std::string &str, const std::string &filter) { + std::string s = str; + return trim(s, filter); +} +/// Print a two part "help" string +CLI11_INLINE std::ostream & +format_help(std::ostream &out, std::string name, const std::string &description, std::size_t wid); + +/// Print subcommand aliases +CLI11_INLINE std::ostream &format_aliases(std::ostream &out, const std::vector &aliases, std::size_t wid); + +/// Verify the first character of an option +/// - is a trigger character, ! has special meaning and new lines would just be annoying to deal with +template bool valid_first_char(T c) { + return ((c != '-') && (static_cast(c) > 33)); // space and '!' not allowed +} + +/// Verify following characters of an option +template bool valid_later_char(T c) { + // = and : are value separators, { has special meaning for option defaults, + // and control codes other than tab would just be annoying to deal with in many places allowing space here has too + // much potential for inadvertent entry errors and bugs + return ((c != '=') && (c != ':') && (c != '{') && ((static_cast(c) > 32) || c == '\t')); +} + +/// Verify an option/subcommand name +CLI11_INLINE bool valid_name_string(const std::string &str); + +/// Verify an app name +inline bool valid_alias_name_string(const std::string &str) { + static const std::string badChars(std::string("\n") + '\0'); + return (str.find_first_of(badChars) == std::string::npos); +} + +/// check if a string is a container segment separator (empty or "%%") +inline bool is_separator(const std::string &str) { + static const std::string sep("%%"); + return (str.empty() || str == sep); +} + +/// Verify that str consists of letters only +inline bool isalpha(const std::string &str) { + return std::all_of(str.begin(), str.end(), [](char c) { return std::isalpha(c, std::locale()); }); +} + +/// Return a lower case version of a string +inline std::string to_lower(std::string str) { + std::transform(std::begin(str), std::end(str), std::begin(str), [](const std::string::value_type &x) { + return std::tolower(x, std::locale()); + }); + return str; +} + +/// remove underscores from a string +inline std::string remove_underscore(std::string str) { + str.erase(std::remove(std::begin(str), std::end(str), '_'), std::end(str)); + return str; +} + +/// Find and replace a substring with another substring +CLI11_INLINE std::string find_and_replace(std::string str, std::string from, std::string to); + +/// check if the flag definitions has possible false flags +inline bool has_default_flag_values(const std::string &flags) { + return (flags.find_first_of("{!") != std::string::npos); +} + +CLI11_INLINE void remove_default_flag_values(std::string &flags); + +/// Check if a string is a member of a list of strings and optionally ignore case or ignore underscores +CLI11_INLINE std::ptrdiff_t find_member(std::string name, + const std::vector names, + bool ignore_case = false, + bool ignore_underscore = false); + +/// Find a trigger string and call a modify callable function that takes the current string and starting position of the +/// trigger and returns the position in the string to search for the next trigger string +template inline std::string find_and_modify(std::string str, std::string trigger, Callable modify) { + std::size_t start_pos = 0; + while((start_pos = str.find(trigger, start_pos)) != std::string::npos) { + start_pos = modify(str, start_pos); + } + return str; +} + +/// close a sequence of characters indicated by a closure character. Brackets allows sub sequences +/// recognized bracket sequences include "'`[(<{ other closure characters are assumed to be literal strings +CLI11_INLINE std::size_t close_sequence(const std::string &str, std::size_t start, char closure_char); + +/// Split a string '"one two" "three"' into 'one two', 'three' +/// Quote characters can be ` ' or " or bracket characters [{(< with matching to the matching bracket +CLI11_INLINE std::vector split_up(std::string str, char delimiter = '\0'); + +/// get the value of an environmental variable or empty string if empty +CLI11_INLINE std::string get_environment_value(const std::string &env_name); + +/// This function detects an equal or colon followed by an escaped quote after an argument +/// then modifies the string to replace the equality with a space. This is needed +/// to allow the split up function to work properly and is intended to be used with the find_and_modify function +/// the return value is the offset+1 which is required by the find_and_modify function. +CLI11_INLINE std::size_t escape_detect(std::string &str, std::size_t offset); + +/// @brief detect if a string has escapable characters +/// @param str the string to do the detection on +/// @return true if the string has escapable characters +CLI11_INLINE bool has_escapable_character(const std::string &str); + +/// @brief escape all escapable characters +/// @param str the string to escape +/// @return a string with the escapble characters escaped with '\' +CLI11_INLINE std::string add_escaped_characters(const std::string &str); + +/// @brief replace the escaped characters with their equivalent +CLI11_INLINE std::string remove_escaped_characters(const std::string &str); + +/// generate a string with all non printable characters escaped to hex codes +CLI11_INLINE std::string binary_escape_string(const std::string &string_to_escape); + +CLI11_INLINE bool is_binary_escaped_string(const std::string &escaped_string); + +/// extract an escaped binary_string +CLI11_INLINE std::string extract_binary_string(const std::string &escaped_string); + +/// process a quoted string, remove the quotes and if appropriate handle escaped characters +CLI11_INLINE bool process_quoted_string(std::string &str, char string_char = '\"', char literal_char = '\''); + +} // namespace detail + + + + +namespace detail { +CLI11_INLINE std::vector split(const std::string &s, char delim) { + std::vector elems; + // Check to see if empty string, give consistent result + if(s.empty()) { + elems.emplace_back(); + } else { + std::stringstream ss; + ss.str(s); + std::string item; + while(std::getline(ss, item, delim)) { + elems.push_back(item); + } + } + return elems; +} + +CLI11_INLINE std::string <rim(std::string &str) { + auto it = std::find_if(str.begin(), str.end(), [](char ch) { return !std::isspace(ch, std::locale()); }); + str.erase(str.begin(), it); + return str; +} + +CLI11_INLINE std::string <rim(std::string &str, const std::string &filter) { + auto it = std::find_if(str.begin(), str.end(), [&filter](char ch) { return filter.find(ch) == std::string::npos; }); + str.erase(str.begin(), it); + return str; +} + +CLI11_INLINE std::string &rtrim(std::string &str) { + auto it = std::find_if(str.rbegin(), str.rend(), [](char ch) { return !std::isspace(ch, std::locale()); }); + str.erase(it.base(), str.end()); + return str; +} + +CLI11_INLINE std::string &rtrim(std::string &str, const std::string &filter) { + auto it = + std::find_if(str.rbegin(), str.rend(), [&filter](char ch) { return filter.find(ch) == std::string::npos; }); + str.erase(it.base(), str.end()); + return str; +} + +CLI11_INLINE std::string &remove_quotes(std::string &str) { + if(str.length() > 1 && (str.front() == '"' || str.front() == '\'' || str.front() == '`')) { + if(str.front() == str.back()) { + str.pop_back(); + str.erase(str.begin(), str.begin() + 1); + } + } + return str; +} + +CLI11_INLINE std::string &remove_outer(std::string &str, char key) { + if(str.length() > 1 && (str.front() == key)) { + if(str.front() == str.back()) { + str.pop_back(); + str.erase(str.begin(), str.begin() + 1); + } + } + return str; +} + +CLI11_INLINE std::string fix_newlines(const std::string &leader, std::string input) { + std::string::size_type n = 0; + while(n != std::string::npos && n < input.size()) { + n = input.find('\n', n); + if(n != std::string::npos) { + input = input.substr(0, n + 1) + leader + input.substr(n + 1); + n += leader.size(); + } + } + return input; +} + +CLI11_INLINE std::ostream & +format_help(std::ostream &out, std::string name, const std::string &description, std::size_t wid) { + name = " " + name; + out << std::setw(static_cast(wid)) << std::left << name; + if(!description.empty()) { + if(name.length() >= wid) + out << "\n" << std::setw(static_cast(wid)) << ""; + for(const char c : description) { + out.put(c); + if(c == '\n') { + out << std::setw(static_cast(wid)) << ""; + } + } + } + out << "\n"; + return out; +} + +CLI11_INLINE std::ostream &format_aliases(std::ostream &out, const std::vector &aliases, std::size_t wid) { + if(!aliases.empty()) { + out << std::setw(static_cast(wid)) << " aliases: "; + bool front = true; + for(const auto &alias : aliases) { + if(!front) { + out << ", "; + } else { + front = false; + } + out << detail::fix_newlines(" ", alias); + } + out << "\n"; + } + return out; +} + +CLI11_INLINE bool valid_name_string(const std::string &str) { + if(str.empty() || !valid_first_char(str[0])) { + return false; + } + auto e = str.end(); + for(auto c = str.begin() + 1; c != e; ++c) + if(!valid_later_char(*c)) + return false; + return true; +} + +CLI11_INLINE std::string find_and_replace(std::string str, std::string from, std::string to) { + + std::size_t start_pos = 0; + + while((start_pos = str.find(from, start_pos)) != std::string::npos) { + str.replace(start_pos, from.length(), to); + start_pos += to.length(); + } + + return str; +} + +CLI11_INLINE void remove_default_flag_values(std::string &flags) { + auto loc = flags.find_first_of('{', 2); + while(loc != std::string::npos) { + auto finish = flags.find_first_of("},", loc + 1); + if((finish != std::string::npos) && (flags[finish] == '}')) { + flags.erase(flags.begin() + static_cast(loc), + flags.begin() + static_cast(finish) + 1); + } + loc = flags.find_first_of('{', loc + 1); + } + flags.erase(std::remove(flags.begin(), flags.end(), '!'), flags.end()); +} + +CLI11_INLINE std::ptrdiff_t +find_member(std::string name, const std::vector names, bool ignore_case, bool ignore_underscore) { + auto it = std::end(names); + if(ignore_case) { + if(ignore_underscore) { + name = detail::to_lower(detail::remove_underscore(name)); + it = std::find_if(std::begin(names), std::end(names), [&name](std::string local_name) { + return detail::to_lower(detail::remove_underscore(local_name)) == name; + }); + } else { + name = detail::to_lower(name); + it = std::find_if(std::begin(names), std::end(names), [&name](std::string local_name) { + return detail::to_lower(local_name) == name; + }); + } + + } else if(ignore_underscore) { + name = detail::remove_underscore(name); + it = std::find_if(std::begin(names), std::end(names), [&name](std::string local_name) { + return detail::remove_underscore(local_name) == name; + }); + } else { + it = std::find(std::begin(names), std::end(names), name); + } + + return (it != std::end(names)) ? (it - std::begin(names)) : (-1); +} + +static const std::string escapedChars("\b\t\n\f\r\"\\"); +static const std::string escapedCharsCode("btnfr\"\\"); +static const std::string bracketChars{"\"'`[(<{"}; +static const std::string matchBracketChars("\"'`])>}"); + +CLI11_INLINE bool has_escapable_character(const std::string &str) { + return (str.find_first_of(escapedChars) != std::string::npos); +} + +CLI11_INLINE std::string add_escaped_characters(const std::string &str) { + std::string out; + out.reserve(str.size() + 4); + for(char s : str) { + auto sloc = escapedChars.find_first_of(s); + if(sloc != std::string::npos) { + out.push_back('\\'); + out.push_back(escapedCharsCode[sloc]); + } else { + out.push_back(s); + } + } + return out; +} + +CLI11_INLINE std::uint32_t hexConvert(char hc) { + int hcode{0}; + if(hc >= '0' && hc <= '9') { + hcode = (hc - '0'); + } else if(hc >= 'A' && hc <= 'F') { + hcode = (hc - 'A' + 10); + } else if(hc >= 'a' && hc <= 'f') { + hcode = (hc - 'a' + 10); + } else { + hcode = -1; + } + return static_cast(hcode); +} + +CLI11_INLINE char make_char(std::uint32_t code) { return static_cast(static_cast(code)); } + +CLI11_INLINE void append_codepoint(std::string &str, std::uint32_t code) { + if(code < 0x80) { // ascii code equivalent + str.push_back(static_cast(code)); + } else if(code < 0x800) { // \u0080 to \u07FF + // 110yyyyx 10xxxxxx; 0x3f == 0b0011'1111 + str.push_back(make_char(0xC0 | code >> 6)); + str.push_back(make_char(0x80 | (code & 0x3F))); + } else if(code < 0x10000) { // U+0800...U+FFFF + if(0xD800 <= code && code <= 0xDFFF) { + throw std::invalid_argument("[0xD800, 0xDFFF] are not valid UTF-8."); + } + // 1110yyyy 10yxxxxx 10xxxxxx + str.push_back(make_char(0xE0 | code >> 12)); + str.push_back(make_char(0x80 | (code >> 6 & 0x3F))); + str.push_back(make_char(0x80 | (code & 0x3F))); + } else if(code < 0x110000) { // U+010000 ... U+10FFFF + // 11110yyy 10yyxxxx 10xxxxxx 10xxxxxx + str.push_back(make_char(0xF0 | code >> 18)); + str.push_back(make_char(0x80 | (code >> 12 & 0x3F))); + str.push_back(make_char(0x80 | (code >> 6 & 0x3F))); + str.push_back(make_char(0x80 | (code & 0x3F))); + } +} + +CLI11_INLINE std::string remove_escaped_characters(const std::string &str) { + + std::string out; + out.reserve(str.size()); + for(auto loc = str.begin(); loc < str.end(); ++loc) { + if(*loc == '\\') { + if(str.end() - loc < 2) { + throw std::invalid_argument("invalid escape sequence " + str); + } + auto ecloc = escapedCharsCode.find_first_of(*(loc + 1)); + if(ecloc != std::string::npos) { + out.push_back(escapedChars[ecloc]); + ++loc; + } else if(*(loc + 1) == 'u') { + // must have 4 hex characters + if(str.end() - loc < 6) { + throw std::invalid_argument("unicode sequence must have 4 hex codes " + str); + } + std::uint32_t code{0}; + std::uint32_t mplier{16 * 16 * 16}; + for(int ii = 2; ii < 6; ++ii) { + std::uint32_t res = hexConvert(*(loc + ii)); + if(res > 0x0F) { + throw std::invalid_argument("unicode sequence must have 4 hex codes " + str); + } + code += res * mplier; + mplier = mplier / 16; + } + append_codepoint(out, code); + loc += 5; + } else if(*(loc + 1) == 'U') { + // must have 8 hex characters + if(str.end() - loc < 10) { + throw std::invalid_argument("unicode sequence must have 8 hex codes " + str); + } + std::uint32_t code{0}; + std::uint32_t mplier{16 * 16 * 16 * 16 * 16 * 16 * 16}; + for(int ii = 2; ii < 10; ++ii) { + std::uint32_t res = hexConvert(*(loc + ii)); + if(res > 0x0F) { + throw std::invalid_argument("unicode sequence must have 8 hex codes " + str); + } + code += res * mplier; + mplier = mplier / 16; + } + append_codepoint(out, code); + loc += 9; + } else if(*(loc + 1) == '0') { + out.push_back('\0'); + ++loc; + } else { + throw std::invalid_argument(std::string("unrecognized escape sequence \\") + *(loc + 1) + " in " + str); + } + } else { + out.push_back(*loc); + } + } + return out; +} + +CLI11_INLINE std::size_t close_string_quote(const std::string &str, std::size_t start, char closure_char) { + std::size_t loc{0}; + for(loc = start + 1; loc < str.size(); ++loc) { + if(str[loc] == closure_char) { + break; + } + if(str[loc] == '\\') { + // skip the next character for escaped sequences + ++loc; + } + } + return loc; +} + +CLI11_INLINE std::size_t close_literal_quote(const std::string &str, std::size_t start, char closure_char) { + auto loc = str.find_first_of(closure_char, start + 1); + return (loc != std::string::npos ? loc : str.size()); +} + +CLI11_INLINE std::size_t close_sequence(const std::string &str, std::size_t start, char closure_char) { + + auto bracket_loc = matchBracketChars.find(closure_char); + switch(bracket_loc) { + case 0: + return close_string_quote(str, start, closure_char); + case 1: + case 2: + case std::string::npos: + return close_literal_quote(str, start, closure_char); + default: + break; + } + + std::string closures(1, closure_char); + auto loc = start + 1; + + while(loc < str.size()) { + if(str[loc] == closures.back()) { + closures.pop_back(); + if(closures.empty()) { + return loc; + } + } + bracket_loc = bracketChars.find(str[loc]); + if(bracket_loc != std::string::npos) { + switch(bracket_loc) { + case 0: + loc = close_string_quote(str, loc, str[loc]); + break; + case 1: + case 2: + loc = close_literal_quote(str, loc, str[loc]); + break; + default: + closures.push_back(matchBracketChars[bracket_loc]); + break; + } + } + ++loc; + } + if(loc > str.size()) { + loc = str.size(); + } + return loc; +} + +CLI11_INLINE std::vector split_up(std::string str, char delimiter) { + + auto find_ws = [delimiter](char ch) { + return (delimiter == '\0') ? std::isspace(ch, std::locale()) : (ch == delimiter); + }; + trim(str); + + std::vector output; + while(!str.empty()) { + if(bracketChars.find_first_of(str[0]) != std::string::npos) { + auto bracketLoc = bracketChars.find_first_of(str[0]); + auto end = close_sequence(str, 0, matchBracketChars[bracketLoc]); + if(end >= str.size()) { + output.push_back(std::move(str)); + str.clear(); + } else { + output.push_back(str.substr(0, end + 1)); + if(end + 2 < str.size()) { + str = str.substr(end + 2); + } else { + str.clear(); + } + } + + } else { + auto it = std::find_if(std::begin(str), std::end(str), find_ws); + if(it != std::end(str)) { + std::string value = std::string(str.begin(), it); + output.push_back(value); + str = std::string(it + 1, str.end()); + } else { + output.push_back(str); + str.clear(); + } + } + trim(str); + } + return output; +} + +CLI11_INLINE std::size_t escape_detect(std::string &str, std::size_t offset) { + auto next = str[offset + 1]; + if((next == '\"') || (next == '\'') || (next == '`')) { + auto astart = str.find_last_of("-/ \"\'`", offset - 1); + if(astart != std::string::npos) { + if(str[astart] == ((str[offset] == '=') ? '-' : '/')) + str[offset] = ' '; // interpret this as a space so the split_up works properly + } + } + return offset + 1; +} + +CLI11_INLINE std::string binary_escape_string(const std::string &string_to_escape) { + // s is our escaped output string + std::string escaped_string{}; + // loop through all characters + for(char c : string_to_escape) { + // check if a given character is printable + // the cast is necessary to avoid undefined behaviour + if(isprint(static_cast(c)) == 0) { + std::stringstream stream; + // if the character is not printable + // we'll convert it to a hex string using a stringstream + // note that since char is signed we have to cast it to unsigned first + stream << std::hex << static_cast(static_cast(c)); + std::string code = stream.str(); + escaped_string += std::string("\\x") + (code.size() < 2 ? "0" : "") + code; + + } else { + escaped_string.push_back(c); + } + } + if(escaped_string != string_to_escape) { + auto sqLoc = escaped_string.find('\''); + while(sqLoc != std::string::npos) { + escaped_string.replace(sqLoc, sqLoc + 1, "\\x27"); + sqLoc = escaped_string.find('\''); + } + escaped_string.insert(0, "'B\"("); + escaped_string.push_back(')'); + escaped_string.push_back('"'); + escaped_string.push_back('\''); + } + return escaped_string; +} + +CLI11_INLINE bool is_binary_escaped_string(const std::string &escaped_string) { + size_t ssize = escaped_string.size(); + if(escaped_string.compare(0, 3, "B\"(") == 0 && escaped_string.compare(ssize - 2, 2, ")\"") == 0) { + return true; + } + return (escaped_string.compare(0, 4, "'B\"(") == 0 && escaped_string.compare(ssize - 3, 3, ")\"'") == 0); +} + +CLI11_INLINE std::string extract_binary_string(const std::string &escaped_string) { + std::size_t start{0}; + std::size_t tail{0}; + size_t ssize = escaped_string.size(); + if(escaped_string.compare(0, 3, "B\"(") == 0 && escaped_string.compare(ssize - 2, 2, ")\"") == 0) { + start = 3; + tail = 2; + } else if(escaped_string.compare(0, 4, "'B\"(") == 0 && escaped_string.compare(ssize - 3, 3, ")\"'") == 0) { + start = 4; + tail = 3; + } + + if(start == 0) { + return escaped_string; + } + std::string outstring; + + outstring.reserve(ssize - start - tail); + std::size_t loc = start; + while(loc < ssize - tail) { + // ssize-2 to skip )" at the end + if(escaped_string[loc] == '\\' && (escaped_string[loc + 1] == 'x' || escaped_string[loc + 1] == 'X')) { + auto c1 = escaped_string[loc + 2]; + auto c2 = escaped_string[loc + 3]; + + std::uint32_t res1 = hexConvert(c1); + std::uint32_t res2 = hexConvert(c2); + if(res1 <= 0x0F && res2 <= 0x0F) { + loc += 4; + outstring.push_back(static_cast(res1 * 16 + res2)); + continue; + } + } + outstring.push_back(escaped_string[loc]); + ++loc; + } + return outstring; +} + +CLI11_INLINE void remove_quotes(std::vector &args) { + for(auto &arg : args) { + if(arg.front() == '\"' && arg.back() == '\"') { + remove_quotes(arg); + // only remove escaped for string arguments not literal strings + arg = remove_escaped_characters(arg); + } else { + remove_quotes(arg); + } + } +} + +CLI11_INLINE bool process_quoted_string(std::string &str, char string_char, char literal_char) { + if(str.size() <= 1) { + return false; + } + if(detail::is_binary_escaped_string(str)) { + str = detail::extract_binary_string(str); + return true; + } + if(str.front() == string_char && str.back() == string_char) { + detail::remove_outer(str, string_char); + if(str.find_first_of('\\') != std::string::npos) { + str = detail::remove_escaped_characters(str); + } + return true; + } + if((str.front() == literal_char || str.front() == '`') && str.back() == str.front()) { + detail::remove_outer(str, str.front()); + return true; + } + return false; +} + +std::string get_environment_value(const std::string &env_name) { + char *buffer = nullptr; + std::string ename_string; + +#ifdef _MSC_VER + // Windows version + std::size_t sz = 0; + if(_dupenv_s(&buffer, &sz, env_name.c_str()) == 0 && buffer != nullptr) { + ename_string = std::string(buffer); + free(buffer); + } +#else + // This also works on Windows, but gives a warning + buffer = std::getenv(env_name.c_str()); + if(buffer != nullptr) { + ename_string = std::string(buffer); + } +#endif + return ename_string; +} + +} // namespace detail + + + +// Use one of these on all error classes. +// These are temporary and are undef'd at the end of this file. +#define CLI11_ERROR_DEF(parent, name) \ + protected: \ + name(std::string ename, std::string msg, int exit_code) : parent(std::move(ename), std::move(msg), exit_code) {} \ + name(std::string ename, std::string msg, ExitCodes exit_code) \ + : parent(std::move(ename), std::move(msg), exit_code) {} \ + \ + public: \ + name(std::string msg, ExitCodes exit_code) : parent(#name, std::move(msg), exit_code) {} \ + name(std::string msg, int exit_code) : parent(#name, std::move(msg), exit_code) {} + +// This is added after the one above if a class is used directly and builds its own message +#define CLI11_ERROR_SIMPLE(name) \ + explicit name(std::string msg) : name(#name, msg, ExitCodes::name) {} + +/// These codes are part of every error in CLI. They can be obtained from e using e.exit_code or as a quick shortcut, +/// int values from e.get_error_code(). +enum class ExitCodes { + Success = 0, + IncorrectConstruction = 100, + BadNameString, + OptionAlreadyAdded, + FileError, + ConversionError, + ValidationError, + RequiredError, + RequiresError, + ExcludesError, + ExtrasError, + ConfigError, + InvalidError, + HorribleError, + OptionNotFound, + ArgumentMismatch, + BaseClass = 127 +}; + +// Error definitions + +/// @defgroup error_group Errors +/// @brief Errors thrown by CLI11 +/// +/// These are the errors that can be thrown. Some of them, like CLI::Success, are not really errors. +/// @{ + +/// All errors derive from this one +class Error : public std::runtime_error { + int actual_exit_code; + std::string error_name{"Error"}; + + public: + CLI11_NODISCARD int get_exit_code() const { return actual_exit_code; } + + CLI11_NODISCARD std::string get_name() const { return error_name; } + + Error(std::string name, std::string msg, int exit_code = static_cast(ExitCodes::BaseClass)) + : runtime_error(msg), actual_exit_code(exit_code), error_name(std::move(name)) {} + + Error(std::string name, std::string msg, ExitCodes exit_code) : Error(name, msg, static_cast(exit_code)) {} +}; + +// Note: Using Error::Error constructors does not work on GCC 4.7 + +/// Construction errors (not in parsing) +class ConstructionError : public Error { + CLI11_ERROR_DEF(Error, ConstructionError) +}; + +/// Thrown when an option is set to conflicting values (non-vector and multi args, for example) +class IncorrectConstruction : public ConstructionError { + CLI11_ERROR_DEF(ConstructionError, IncorrectConstruction) + CLI11_ERROR_SIMPLE(IncorrectConstruction) + static IncorrectConstruction PositionalFlag(std::string name) { + return IncorrectConstruction(name + ": Flags cannot be positional"); + } + static IncorrectConstruction Set0Opt(std::string name) { + return IncorrectConstruction(name + ": Cannot set 0 expected, use a flag instead"); + } + static IncorrectConstruction SetFlag(std::string name) { + return IncorrectConstruction(name + ": Cannot set an expected number for flags"); + } + static IncorrectConstruction ChangeNotVector(std::string name) { + return IncorrectConstruction(name + ": You can only change the expected arguments for vectors"); + } + static IncorrectConstruction AfterMultiOpt(std::string name) { + return IncorrectConstruction( + name + ": You can't change expected arguments after you've changed the multi option policy!"); + } + static IncorrectConstruction MissingOption(std::string name) { + return IncorrectConstruction("Option " + name + " is not defined"); + } + static IncorrectConstruction MultiOptionPolicy(std::string name) { + return IncorrectConstruction(name + ": multi_option_policy only works for flags and exact value options"); + } +}; + +/// Thrown on construction of a bad name +class BadNameString : public ConstructionError { + CLI11_ERROR_DEF(ConstructionError, BadNameString) + CLI11_ERROR_SIMPLE(BadNameString) + static BadNameString OneCharName(std::string name) { return BadNameString("Invalid one char name: " + name); } + static BadNameString MissingDash(std::string name) { + return BadNameString("Long names strings require 2 dashes " + name); + } + static BadNameString BadLongName(std::string name) { return BadNameString("Bad long name: " + name); } + static BadNameString BadPositionalName(std::string name) { + return BadNameString("Invalid positional Name: " + name); + } + static BadNameString DashesOnly(std::string name) { + return BadNameString("Must have a name, not just dashes: " + name); + } + static BadNameString MultiPositionalNames(std::string name) { + return BadNameString("Only one positional name allowed, remove: " + name); + } +}; + +/// Thrown when an option already exists +class OptionAlreadyAdded : public ConstructionError { + CLI11_ERROR_DEF(ConstructionError, OptionAlreadyAdded) + explicit OptionAlreadyAdded(std::string name) + : OptionAlreadyAdded(name + " is already added", ExitCodes::OptionAlreadyAdded) {} + static OptionAlreadyAdded Requires(std::string name, std::string other) { + return {name + " requires " + other, ExitCodes::OptionAlreadyAdded}; + } + static OptionAlreadyAdded Excludes(std::string name, std::string other) { + return {name + " excludes " + other, ExitCodes::OptionAlreadyAdded}; + } +}; + +// Parsing errors + +/// Anything that can error in Parse +class ParseError : public Error { + CLI11_ERROR_DEF(Error, ParseError) +}; + +// Not really "errors" + +/// This is a successful completion on parsing, supposed to exit +class Success : public ParseError { + CLI11_ERROR_DEF(ParseError, Success) + Success() : Success("Successfully completed, should be caught and quit", ExitCodes::Success) {} +}; + +/// -h or --help on command line +class CallForHelp : public Success { + CLI11_ERROR_DEF(Success, CallForHelp) + CallForHelp() : CallForHelp("This should be caught in your main function, see examples", ExitCodes::Success) {} +}; + +/// Usually something like --help-all on command line +class CallForAllHelp : public Success { + CLI11_ERROR_DEF(Success, CallForAllHelp) + CallForAllHelp() + : CallForAllHelp("This should be caught in your main function, see examples", ExitCodes::Success) {} +}; + +/// -v or --version on command line +class CallForVersion : public Success { + CLI11_ERROR_DEF(Success, CallForVersion) + CallForVersion() + : CallForVersion("This should be caught in your main function, see examples", ExitCodes::Success) {} +}; + +/// Does not output a diagnostic in CLI11_PARSE, but allows main() to return with a specific error code. +class RuntimeError : public ParseError { + CLI11_ERROR_DEF(ParseError, RuntimeError) + explicit RuntimeError(int exit_code = 1) : RuntimeError("Runtime error", exit_code) {} +}; + +/// Thrown when parsing an INI file and it is missing +class FileError : public ParseError { + CLI11_ERROR_DEF(ParseError, FileError) + CLI11_ERROR_SIMPLE(FileError) + static FileError Missing(std::string name) { return FileError(name + " was not readable (missing?)"); } +}; + +/// Thrown when conversion call back fails, such as when an int fails to coerce to a string +class ConversionError : public ParseError { + CLI11_ERROR_DEF(ParseError, ConversionError) + CLI11_ERROR_SIMPLE(ConversionError) + ConversionError(std::string member, std::string name) + : ConversionError("The value " + member + " is not an allowed value for " + name) {} + ConversionError(std::string name, std::vector results) + : ConversionError("Could not convert: " + name + " = " + detail::join(results)) {} + static ConversionError TooManyInputsFlag(std::string name) { + return ConversionError(name + ": too many inputs for a flag"); + } + static ConversionError TrueFalse(std::string name) { + return ConversionError(name + ": Should be true/false or a number"); + } +}; + +/// Thrown when validation of results fails +class ValidationError : public ParseError { + CLI11_ERROR_DEF(ParseError, ValidationError) + CLI11_ERROR_SIMPLE(ValidationError) + explicit ValidationError(std::string name, std::string msg) : ValidationError(name + ": " + msg) {} +}; + +/// Thrown when a required option is missing +class RequiredError : public ParseError { + CLI11_ERROR_DEF(ParseError, RequiredError) + explicit RequiredError(std::string name) : RequiredError(name + " is required", ExitCodes::RequiredError) {} + static RequiredError Subcommand(std::size_t min_subcom) { + if(min_subcom == 1) { + return RequiredError("A subcommand"); + } + return {"Requires at least " + std::to_string(min_subcom) + " subcommands", ExitCodes::RequiredError}; + } + static RequiredError + Option(std::size_t min_option, std::size_t max_option, std::size_t used, const std::string &option_list) { + if((min_option == 1) && (max_option == 1) && (used == 0)) + return RequiredError("Exactly 1 option from [" + option_list + "]"); + if((min_option == 1) && (max_option == 1) && (used > 1)) { + return {"Exactly 1 option from [" + option_list + "] is required but " + std::to_string(used) + + " were given", + ExitCodes::RequiredError}; + } + if((min_option == 1) && (used == 0)) + return RequiredError("At least 1 option from [" + option_list + "]"); + if(used < min_option) { + return {"Requires at least " + std::to_string(min_option) + " options used but only " + + std::to_string(used) + " were given from [" + option_list + "]", + ExitCodes::RequiredError}; + } + if(max_option == 1) + return {"Requires at most 1 options be given from [" + option_list + "]", ExitCodes::RequiredError}; + + return {"Requires at most " + std::to_string(max_option) + " options be used but " + std::to_string(used) + + " were given from [" + option_list + "]", + ExitCodes::RequiredError}; + } +}; + +/// Thrown when the wrong number of arguments has been received +class ArgumentMismatch : public ParseError { + CLI11_ERROR_DEF(ParseError, ArgumentMismatch) + CLI11_ERROR_SIMPLE(ArgumentMismatch) + ArgumentMismatch(std::string name, int expected, std::size_t received) + : ArgumentMismatch(expected > 0 ? ("Expected exactly " + std::to_string(expected) + " arguments to " + name + + ", got " + std::to_string(received)) + : ("Expected at least " + std::to_string(-expected) + " arguments to " + name + + ", got " + std::to_string(received)), + ExitCodes::ArgumentMismatch) {} + + static ArgumentMismatch AtLeast(std::string name, int num, std::size_t received) { + return ArgumentMismatch(name + ": At least " + std::to_string(num) + " required but received " + + std::to_string(received)); + } + static ArgumentMismatch AtMost(std::string name, int num, std::size_t received) { + return ArgumentMismatch(name + ": At Most " + std::to_string(num) + " required but received " + + std::to_string(received)); + } + static ArgumentMismatch TypedAtLeast(std::string name, int num, std::string type) { + return ArgumentMismatch(name + ": " + std::to_string(num) + " required " + type + " missing"); + } + static ArgumentMismatch FlagOverride(std::string name) { + return ArgumentMismatch(name + " was given a disallowed flag override"); + } + static ArgumentMismatch PartialType(std::string name, int num, std::string type) { + return ArgumentMismatch(name + ": " + type + " only partially specified: " + std::to_string(num) + + " required for each element"); + } +}; + +/// Thrown when a requires option is missing +class RequiresError : public ParseError { + CLI11_ERROR_DEF(ParseError, RequiresError) + RequiresError(std::string curname, std::string subname) + : RequiresError(curname + " requires " + subname, ExitCodes::RequiresError) {} +}; + +/// Thrown when an excludes option is present +class ExcludesError : public ParseError { + CLI11_ERROR_DEF(ParseError, ExcludesError) + ExcludesError(std::string curname, std::string subname) + : ExcludesError(curname + " excludes " + subname, ExitCodes::ExcludesError) {} +}; + +/// Thrown when too many positionals or options are found +class ExtrasError : public ParseError { + CLI11_ERROR_DEF(ParseError, ExtrasError) + explicit ExtrasError(std::vector args) + : ExtrasError((args.size() > 1 ? "The following arguments were not expected: " + : "The following argument was not expected: ") + + detail::rjoin(args, " "), + ExitCodes::ExtrasError) {} + ExtrasError(const std::string &name, std::vector args) + : ExtrasError(name, + (args.size() > 1 ? "The following arguments were not expected: " + : "The following argument was not expected: ") + + detail::rjoin(args, " "), + ExitCodes::ExtrasError) {} +}; + +/// Thrown when extra values are found in an INI file +class ConfigError : public ParseError { + CLI11_ERROR_DEF(ParseError, ConfigError) + CLI11_ERROR_SIMPLE(ConfigError) + static ConfigError Extras(std::string item) { return ConfigError("INI was not able to parse " + item); } + static ConfigError NotConfigurable(std::string item) { + return ConfigError(item + ": This option is not allowed in a configuration file"); + } +}; + +/// Thrown when validation fails before parsing +class InvalidError : public ParseError { + CLI11_ERROR_DEF(ParseError, InvalidError) + explicit InvalidError(std::string name) + : InvalidError(name + ": Too many positional arguments with unlimited expected args", ExitCodes::InvalidError) { + } +}; + +/// This is just a safety check to verify selection and parsing match - you should not ever see it +/// Strings are directly added to this error, but again, it should never be seen. +class HorribleError : public ParseError { + CLI11_ERROR_DEF(ParseError, HorribleError) + CLI11_ERROR_SIMPLE(HorribleError) +}; + +// After parsing + +/// Thrown when counting a non-existent option +class OptionNotFound : public Error { + CLI11_ERROR_DEF(Error, OptionNotFound) + explicit OptionNotFound(std::string name) : OptionNotFound(name + " not found", ExitCodes::OptionNotFound) {} +}; + +#undef CLI11_ERROR_DEF +#undef CLI11_ERROR_SIMPLE + +/// @} + + + + +// Type tools + +// Utilities for type enabling +namespace detail { +// Based generally on https://rmf.io/cxx11/almost-static-if +/// Simple empty scoped class +enum class enabler {}; + +/// An instance to use in EnableIf +constexpr enabler dummy = {}; +} // namespace detail + +/// A copy of enable_if_t from C++14, compatible with C++11. +/// +/// We could check to see if C++14 is being used, but it does not hurt to redefine this +/// (even Google does this: https://github.com/google/skia/blob/main/include/private/SkTLogic.h) +/// It is not in the std namespace anyway, so no harm done. +template using enable_if_t = typename std::enable_if::type; + +/// A copy of std::void_t from C++17 (helper for C++11 and C++14) +template struct make_void { + using type = void; +}; + +/// A copy of std::void_t from C++17 - same reasoning as enable_if_t, it does not hurt to redefine +template using void_t = typename make_void::type; + +/// A copy of std::conditional_t from C++14 - same reasoning as enable_if_t, it does not hurt to redefine +template using conditional_t = typename std::conditional::type; + +/// Check to see if something is bool (fail check by default) +template struct is_bool : std::false_type {}; + +/// Check to see if something is bool (true if actually a bool) +template <> struct is_bool : std::true_type {}; + +/// Check to see if something is a shared pointer +template struct is_shared_ptr : std::false_type {}; + +/// Check to see if something is a shared pointer (True if really a shared pointer) +template struct is_shared_ptr> : std::true_type {}; + +/// Check to see if something is a shared pointer (True if really a shared pointer) +template struct is_shared_ptr> : std::true_type {}; + +/// Check to see if something is copyable pointer +template struct is_copyable_ptr { + static bool const value = is_shared_ptr::value || std::is_pointer::value; +}; + +/// This can be specialized to override the type deduction for IsMember. +template struct IsMemberType { + using type = T; +}; + +/// The main custom type needed here is const char * should be a string. +template <> struct IsMemberType { + using type = std::string; +}; + +namespace adl_detail { +/// Check for existence of user-supplied lexical_cast. +/// +/// This struct has to be in a separate namespace so that it doesn't see our lexical_cast overloads in CLI::detail. +/// Standard says it shouldn't see them if it's defined before the corresponding lexical_cast declarations, but this +/// requires a working implementation of two-phase lookup, and not all compilers can boast that (msvc, ahem). +template class is_lexical_castable { + template + static auto test(int) -> decltype(lexical_cast(std::declval(), std::declval()), std::true_type()); + + template static auto test(...) -> std::false_type; + + public: + static constexpr bool value = decltype(test(0))::value; +}; +} // namespace adl_detail + +namespace detail { + +// These are utilities for IsMember and other transforming objects + +/// Handy helper to access the element_type generically. This is not part of is_copyable_ptr because it requires that +/// pointer_traits be valid. + +/// not a pointer +template struct element_type { + using type = T; +}; + +template struct element_type::value>::type> { + using type = typename std::pointer_traits::element_type; +}; + +/// Combination of the element type and value type - remove pointer (including smart pointers) and get the value_type of +/// the container +template struct element_value_type { + using type = typename element_type::type::value_type; +}; + +/// Adaptor for set-like structure: This just wraps a normal container in a few utilities that do almost nothing. +template struct pair_adaptor : std::false_type { + using value_type = typename T::value_type; + using first_type = typename std::remove_const::type; + using second_type = typename std::remove_const::type; + + /// Get the first value (really just the underlying value) + template static auto first(Q &&pair_value) -> decltype(std::forward(pair_value)) { + return std::forward(pair_value); + } + /// Get the second value (really just the underlying value) + template static auto second(Q &&pair_value) -> decltype(std::forward(pair_value)) { + return std::forward(pair_value); + } +}; + +/// Adaptor for map-like structure (true version, must have key_type and mapped_type). +/// This wraps a mapped container in a few utilities access it in a general way. +template +struct pair_adaptor< + T, + conditional_t, void>> + : std::true_type { + using value_type = typename T::value_type; + using first_type = typename std::remove_const::type; + using second_type = typename std::remove_const::type; + + /// Get the first value (really just the underlying value) + template static auto first(Q &&pair_value) -> decltype(std::get<0>(std::forward(pair_value))) { + return std::get<0>(std::forward(pair_value)); + } + /// Get the second value (really just the underlying value) + template static auto second(Q &&pair_value) -> decltype(std::get<1>(std::forward(pair_value))) { + return std::get<1>(std::forward(pair_value)); + } +}; + +// Warning is suppressed due to "bug" in gcc<5.0 and gcc 7.0 with c++17 enabled that generates a Wnarrowing warning +// in the unevaluated context even if the function that was using this wasn't used. The standard says narrowing in +// brace initialization shouldn't be allowed but for backwards compatibility gcc allows it in some contexts. It is a +// little fuzzy what happens in template constructs and I think that was something GCC took a little while to work out. +// But regardless some versions of gcc generate a warning when they shouldn't from the following code so that should be +// suppressed +#ifdef __GNUC__ +#pragma GCC diagnostic push +#pragma GCC diagnostic ignored "-Wnarrowing" +#endif +// check for constructibility from a specific type and copy assignable used in the parse detection +template class is_direct_constructible { + template + static auto test(int, std::true_type) -> decltype( +// NVCC warns about narrowing conversions here +#ifdef __CUDACC__ +#ifdef __NVCC_DIAG_PRAGMA_SUPPORT__ +#pragma nv_diag_suppress 2361 +#else +#pragma diag_suppress 2361 +#endif +#endif + TT{std::declval()} +#ifdef __CUDACC__ +#ifdef __NVCC_DIAG_PRAGMA_SUPPORT__ +#pragma nv_diag_default 2361 +#else +#pragma diag_default 2361 +#endif +#endif + , + std::is_move_assignable()); + + template static auto test(int, std::false_type) -> std::false_type; + + template static auto test(...) -> std::false_type; + + public: + static constexpr bool value = decltype(test(0, typename std::is_constructible::type()))::value; +}; +#ifdef __GNUC__ +#pragma GCC diagnostic pop +#endif + +// Check for output streamability +// Based on https://stackoverflow.com/questions/22758291/how-can-i-detect-if-a-type-can-be-streamed-to-an-stdostream + +template class is_ostreamable { + template + static auto test(int) -> decltype(std::declval() << std::declval(), std::true_type()); + + template static auto test(...) -> std::false_type; + + public: + static constexpr bool value = decltype(test(0))::value; +}; + +/// Check for input streamability +template class is_istreamable { + template + static auto test(int) -> decltype(std::declval() >> std::declval(), std::true_type()); + + template static auto test(...) -> std::false_type; + + public: + static constexpr bool value = decltype(test(0))::value; +}; + +/// Check for complex +template class is_complex { + template + static auto test(int) -> decltype(std::declval().real(), std::declval().imag(), std::true_type()); + + template static auto test(...) -> std::false_type; + + public: + static constexpr bool value = decltype(test(0))::value; +}; + +/// Templated operation to get a value from a stream +template ::value, detail::enabler> = detail::dummy> +bool from_stream(const std::string &istring, T &obj) { + std::istringstream is; + is.str(istring); + is >> obj; + return !is.fail() && !is.rdbuf()->in_avail(); +} + +template ::value, detail::enabler> = detail::dummy> +bool from_stream(const std::string & /*istring*/, T & /*obj*/) { + return false; +} + +// check to see if an object is a mutable container (fail by default) +template struct is_mutable_container : std::false_type {}; + +/// type trait to test if a type is a mutable container meaning it has a value_type, it has an iterator, a clear, and +/// end methods and an insert function. And for our purposes we exclude std::string and types that can be constructed +/// from a std::string +template +struct is_mutable_container< + T, + conditional_t().end()), + decltype(std::declval().clear()), + decltype(std::declval().insert(std::declval().end())>(), + std::declval()))>, + void>> : public conditional_t::value || + std::is_constructible::value, + std::false_type, + std::true_type> {}; + +// check to see if an object is a mutable container (fail by default) +template struct is_readable_container : std::false_type {}; + +/// type trait to test if a type is a container meaning it has a value_type, it has an iterator, a clear, and an end +/// methods and an insert function. And for our purposes we exclude std::string and types that can be constructed from +/// a std::string +template +struct is_readable_container< + T, + conditional_t().end()), decltype(std::declval().begin())>, void>> + : public std::true_type {}; + +// check to see if an object is a wrapper (fail by default) +template struct is_wrapper : std::false_type {}; + +// check if an object is a wrapper (it has a value_type defined) +template +struct is_wrapper, void>> : public std::true_type {}; + +// Check for tuple like types, as in classes with a tuple_size type trait +template class is_tuple_like { + template + // static auto test(int) + // -> decltype(std::conditional<(std::tuple_size::value > 0), std::true_type, std::false_type>::type()); + static auto test(int) -> decltype(std::tuple_size::type>::value, std::true_type{}); + template static auto test(...) -> std::false_type; + + public: + static constexpr bool value = decltype(test(0))::value; +}; + +/// Convert an object to a string (directly forward if this can become a string) +template ::value, detail::enabler> = detail::dummy> +auto to_string(T &&value) -> decltype(std::forward(value)) { + return std::forward(value); +} + +/// Construct a string from the object +template ::value && !std::is_convertible::value, + detail::enabler> = detail::dummy> +std::string to_string(const T &value) { + return std::string(value); // NOLINT(google-readability-casting) +} + +/// Convert an object to a string (streaming must be supported for that type) +template ::value && !std::is_constructible::value && + is_ostreamable::value, + detail::enabler> = detail::dummy> +std::string to_string(T &&value) { + std::stringstream stream; + stream << value; + return stream.str(); +} + +/// If conversion is not supported, return an empty string (streaming is not supported for that type) +template ::value && !is_ostreamable::value && + !is_readable_container::type>::value, + detail::enabler> = detail::dummy> +std::string to_string(T &&) { + return {}; +} + +/// convert a readable container to a string +template ::value && !is_ostreamable::value && + is_readable_container::value, + detail::enabler> = detail::dummy> +std::string to_string(T &&variable) { + auto cval = variable.begin(); + auto end = variable.end(); + if(cval == end) { + return {"{}"}; + } + std::vector defaults; + while(cval != end) { + defaults.emplace_back(CLI::detail::to_string(*cval)); + ++cval; + } + return {"[" + detail::join(defaults) + "]"}; +} + +/// special template overload +template ::value, detail::enabler> = detail::dummy> +auto checked_to_string(T &&value) -> decltype(to_string(std::forward(value))) { + return to_string(std::forward(value)); +} + +/// special template overload +template ::value, detail::enabler> = detail::dummy> +std::string checked_to_string(T &&) { + return std::string{}; +} +/// get a string as a convertible value for arithmetic types +template ::value, detail::enabler> = detail::dummy> +std::string value_string(const T &value) { + return std::to_string(value); +} +/// get a string as a convertible value for enumerations +template ::value, detail::enabler> = detail::dummy> +std::string value_string(const T &value) { + return std::to_string(static_cast::type>(value)); +} +/// for other types just use the regular to_string function +template ::value && !std::is_arithmetic::value, detail::enabler> = detail::dummy> +auto value_string(const T &value) -> decltype(to_string(value)) { + return to_string(value); +} + +/// template to get the underlying value type if it exists or use a default +template struct wrapped_type { + using type = def; +}; + +/// Type size for regular object types that do not look like a tuple +template struct wrapped_type::value>::type> { + using type = typename T::value_type; +}; + +/// This will only trigger for actual void type +template struct type_count_base { + static const int value{0}; +}; + +/// Type size for regular object types that do not look like a tuple +template +struct type_count_base::value && !is_mutable_container::value && + !std::is_void::value>::type> { + static constexpr int value{1}; +}; + +/// the base tuple size +template +struct type_count_base::value && !is_mutable_container::value>::type> { + static constexpr int value{std::tuple_size::value}; +}; + +/// Type count base for containers is the type_count_base of the individual element +template struct type_count_base::value>::type> { + static constexpr int value{type_count_base::value}; +}; + +/// Set of overloads to get the type size of an object + +/// forward declare the subtype_count structure +template struct subtype_count; + +/// forward declare the subtype_count_min structure +template struct subtype_count_min; + +/// This will only trigger for actual void type +template struct type_count { + static const int value{0}; +}; + +/// Type size for regular object types that do not look like a tuple +template +struct type_count::value && !is_tuple_like::value && !is_complex::value && + !std::is_void::value>::type> { + static constexpr int value{1}; +}; + +/// Type size for complex since it sometimes looks like a wrapper +template struct type_count::value>::type> { + static constexpr int value{2}; +}; + +/// Type size of types that are wrappers,except complex and tuples(which can also be wrappers sometimes) +template struct type_count::value>::type> { + static constexpr int value{subtype_count::value}; +}; + +/// Type size of types that are wrappers,except containers complex and tuples(which can also be wrappers sometimes) +template +struct type_count::value && !is_complex::value && !is_tuple_like::value && + !is_mutable_container::value>::type> { + static constexpr int value{type_count::value}; +}; + +/// 0 if the index > tuple size +template +constexpr typename std::enable_if::value, int>::type tuple_type_size() { + return 0; +} + +/// Recursively generate the tuple type name +template + constexpr typename std::enable_if < I::value, int>::type tuple_type_size() { + return subtype_count::type>::value + tuple_type_size(); +} + +/// Get the type size of the sum of type sizes for all the individual tuple types +template struct type_count::value>::type> { + static constexpr int value{tuple_type_size()}; +}; + +/// definition of subtype count +template struct subtype_count { + static constexpr int value{is_mutable_container::value ? expected_max_vector_size : type_count::value}; +}; + +/// This will only trigger for actual void type +template struct type_count_min { + static const int value{0}; +}; + +/// Type size for regular object types that do not look like a tuple +template +struct type_count_min< + T, + typename std::enable_if::value && !is_tuple_like::value && !is_wrapper::value && + !is_complex::value && !std::is_void::value>::type> { + static constexpr int value{type_count::value}; +}; + +/// Type size for complex since it sometimes looks like a wrapper +template struct type_count_min::value>::type> { + static constexpr int value{1}; +}; + +/// Type size min of types that are wrappers,except complex and tuples(which can also be wrappers sometimes) +template +struct type_count_min< + T, + typename std::enable_if::value && !is_complex::value && !is_tuple_like::value>::type> { + static constexpr int value{subtype_count_min::value}; +}; + +/// 0 if the index > tuple size +template +constexpr typename std::enable_if::value, int>::type tuple_type_size_min() { + return 0; +} + +/// Recursively generate the tuple type name +template + constexpr typename std::enable_if < I::value, int>::type tuple_type_size_min() { + return subtype_count_min::type>::value + tuple_type_size_min(); +} + +/// Get the type size of the sum of type sizes for all the individual tuple types +template struct type_count_min::value>::type> { + static constexpr int value{tuple_type_size_min()}; +}; + +/// definition of subtype count +template struct subtype_count_min { + static constexpr int value{is_mutable_container::value + ? ((type_count::value < expected_max_vector_size) ? type_count::value : 0) + : type_count_min::value}; +}; + +/// This will only trigger for actual void type +template struct expected_count { + static const int value{0}; +}; + +/// For most types the number of expected items is 1 +template +struct expected_count::value && !is_wrapper::value && + !std::is_void::value>::type> { + static constexpr int value{1}; +}; +/// number of expected items in a vector +template struct expected_count::value>::type> { + static constexpr int value{expected_max_vector_size}; +}; + +/// number of expected items in a vector +template +struct expected_count::value && is_wrapper::value>::type> { + static constexpr int value{expected_count::value}; +}; + +// Enumeration of the different supported categorizations of objects +enum class object_category : int { + char_value = 1, + integral_value = 2, + unsigned_integral = 4, + enumeration = 6, + boolean_value = 8, + floating_point = 10, + number_constructible = 12, + double_constructible = 14, + integer_constructible = 16, + // string like types + string_assignable = 23, + string_constructible = 24, + wstring_assignable = 25, + wstring_constructible = 26, + other = 45, + // special wrapper or container types + wrapper_value = 50, + complex_number = 60, + tuple_value = 70, + container_value = 80, + +}; + +/// Set of overloads to classify an object according to type + +/// some type that is not otherwise recognized +template struct classify_object { + static constexpr object_category value{object_category::other}; +}; + +/// Signed integers +template +struct classify_object< + T, + typename std::enable_if::value && !std::is_same::value && std::is_signed::value && + !is_bool::value && !std::is_enum::value>::type> { + static constexpr object_category value{object_category::integral_value}; +}; + +/// Unsigned integers +template +struct classify_object::value && std::is_unsigned::value && + !std::is_same::value && !is_bool::value>::type> { + static constexpr object_category value{object_category::unsigned_integral}; +}; + +/// single character values +template +struct classify_object::value && !std::is_enum::value>::type> { + static constexpr object_category value{object_category::char_value}; +}; + +/// Boolean values +template struct classify_object::value>::type> { + static constexpr object_category value{object_category::boolean_value}; +}; + +/// Floats +template struct classify_object::value>::type> { + static constexpr object_category value{object_category::floating_point}; +}; +#if defined _MSC_VER +// in MSVC wstring should take precedence if available this isn't as useful on other compilers due to the broader use of +// utf-8 encoding +#define WIDE_STRING_CHECK \ + !std::is_assignable::value && !std::is_constructible::value +#define STRING_CHECK true +#else +#define WIDE_STRING_CHECK true +#define STRING_CHECK !std::is_assignable::value && !std::is_constructible::value +#endif + +/// String and similar direct assignment +template +struct classify_object< + T, + typename std::enable_if::value && !std::is_integral::value && WIDE_STRING_CHECK && + std::is_assignable::value>::type> { + static constexpr object_category value{object_category::string_assignable}; +}; + +/// String and similar constructible and copy assignment +template +struct classify_object< + T, + typename std::enable_if::value && !std::is_integral::value && + !std::is_assignable::value && (type_count::value == 1) && + WIDE_STRING_CHECK && std::is_constructible::value>::type> { + static constexpr object_category value{object_category::string_constructible}; +}; + +/// Wide strings +template +struct classify_object::value && !std::is_integral::value && + STRING_CHECK && std::is_assignable::value>::type> { + static constexpr object_category value{object_category::wstring_assignable}; +}; + +template +struct classify_object< + T, + typename std::enable_if::value && !std::is_integral::value && + !std::is_assignable::value && (type_count::value == 1) && + STRING_CHECK && std::is_constructible::value>::type> { + static constexpr object_category value{object_category::wstring_constructible}; +}; + +/// Enumerations +template struct classify_object::value>::type> { + static constexpr object_category value{object_category::enumeration}; +}; + +template struct classify_object::value>::type> { + static constexpr object_category value{object_category::complex_number}; +}; + +/// Handy helper to contain a bunch of checks that rule out many common types (integers, string like, floating point, +/// vectors, and enumerations +template struct uncommon_type { + using type = typename std::conditional< + !std::is_floating_point::value && !std::is_integral::value && + !std::is_assignable::value && !std::is_constructible::value && + !std::is_assignable::value && !std::is_constructible::value && + !is_complex::value && !is_mutable_container::value && !std::is_enum::value, + std::true_type, + std::false_type>::type; + static constexpr bool value = type::value; +}; + +/// wrapper type +template +struct classify_object::value && is_wrapper::value && + !is_tuple_like::value && uncommon_type::value)>::type> { + static constexpr object_category value{object_category::wrapper_value}; +}; + +/// Assignable from double or int +template +struct classify_object::value && type_count::value == 1 && + !is_wrapper::value && is_direct_constructible::value && + is_direct_constructible::value>::type> { + static constexpr object_category value{object_category::number_constructible}; +}; + +/// Assignable from int +template +struct classify_object::value && type_count::value == 1 && + !is_wrapper::value && !is_direct_constructible::value && + is_direct_constructible::value>::type> { + static constexpr object_category value{object_category::integer_constructible}; +}; + +/// Assignable from double +template +struct classify_object::value && type_count::value == 1 && + !is_wrapper::value && is_direct_constructible::value && + !is_direct_constructible::value>::type> { + static constexpr object_category value{object_category::double_constructible}; +}; + +/// Tuple type +template +struct classify_object< + T, + typename std::enable_if::value && + ((type_count::value >= 2 && !is_wrapper::value) || + (uncommon_type::value && !is_direct_constructible::value && + !is_direct_constructible::value) || + (uncommon_type::value && type_count::value >= 2))>::type> { + static constexpr object_category value{object_category::tuple_value}; + // the condition on this class requires it be like a tuple, but on some compilers (like Xcode) tuples can be + // constructed from just the first element so tuples of can be constructed from a string, which + // could lead to issues so there are two variants of the condition, the first isolates things with a type size >=2 + // mainly to get tuples on Xcode with the exception of wrappers, the second is the main one and just separating out + // those cases that are caught by other object classifications +}; + +/// container type +template struct classify_object::value>::type> { + static constexpr object_category value{object_category::container_value}; +}; + +// Type name print + +/// Was going to be based on +/// http://stackoverflow.com/questions/1055452/c-get-name-of-type-in-template +/// But this is cleaner and works better in this case + +template ::value == object_category::char_value, detail::enabler> = detail::dummy> +constexpr const char *type_name() { + return "CHAR"; +} + +template ::value == object_category::integral_value || + classify_object::value == object_category::integer_constructible, + detail::enabler> = detail::dummy> +constexpr const char *type_name() { + return "INT"; +} + +template ::value == object_category::unsigned_integral, detail::enabler> = detail::dummy> +constexpr const char *type_name() { + return "UINT"; +} + +template ::value == object_category::floating_point || + classify_object::value == object_category::number_constructible || + classify_object::value == object_category::double_constructible, + detail::enabler> = detail::dummy> +constexpr const char *type_name() { + return "FLOAT"; +} + +/// Print name for enumeration types +template ::value == object_category::enumeration, detail::enabler> = detail::dummy> +constexpr const char *type_name() { + return "ENUM"; +} + +/// Print name for enumeration types +template ::value == object_category::boolean_value, detail::enabler> = detail::dummy> +constexpr const char *type_name() { + return "BOOLEAN"; +} + +/// Print name for enumeration types +template ::value == object_category::complex_number, detail::enabler> = detail::dummy> +constexpr const char *type_name() { + return "COMPLEX"; +} + +/// Print for all other types +template ::value >= object_category::string_assignable && + classify_object::value <= object_category::other, + detail::enabler> = detail::dummy> +constexpr const char *type_name() { + return "TEXT"; +} +/// typename for tuple value +template ::value == object_category::tuple_value && type_count_base::value >= 2, + detail::enabler> = detail::dummy> +std::string type_name(); // forward declaration + +/// Generate type name for a wrapper or container value +template ::value == object_category::container_value || + classify_object::value == object_category::wrapper_value, + detail::enabler> = detail::dummy> +std::string type_name(); // forward declaration + +/// Print name for single element tuple types +template ::value == object_category::tuple_value && type_count_base::value == 1, + detail::enabler> = detail::dummy> +inline std::string type_name() { + return type_name::type>::type>(); +} + +/// Empty string if the index > tuple size +template +inline typename std::enable_if::value, std::string>::type tuple_name() { + return std::string{}; +} + +/// Recursively generate the tuple type name +template +inline typename std::enable_if<(I < type_count_base::value), std::string>::type tuple_name() { + auto str = std::string{type_name::type>::type>()} + ',' + + tuple_name(); + if(str.back() == ',') + str.pop_back(); + return str; +} + +/// Print type name for tuples with 2 or more elements +template ::value == object_category::tuple_value && type_count_base::value >= 2, + detail::enabler>> +inline std::string type_name() { + auto tname = std::string(1, '[') + tuple_name(); + tname.push_back(']'); + return tname; +} + +/// get the type name for a type that has a value_type member +template ::value == object_category::container_value || + classify_object::value == object_category::wrapper_value, + detail::enabler>> +inline std::string type_name() { + return type_name(); +} + +// Lexical cast + +/// Convert to an unsigned integral +template ::value, detail::enabler> = detail::dummy> +bool integral_conversion(const std::string &input, T &output) noexcept { + if(input.empty() || input.front() == '-') { + return false; + } + char *val{nullptr}; + errno = 0; + std::uint64_t output_ll = std::strtoull(input.c_str(), &val, 0); + if(errno == ERANGE) { + return false; + } + output = static_cast(output_ll); + if(val == (input.c_str() + input.size()) && static_cast(output) == output_ll) { + return true; + } + val = nullptr; + std::int64_t output_sll = std::strtoll(input.c_str(), &val, 0); + if(val == (input.c_str() + input.size())) { + output = (output_sll < 0) ? static_cast(0) : static_cast(output_sll); + return (static_cast(output) == output_sll); + } + // remove separators + if(input.find_first_of("_'") != std::string::npos) { + std::string nstring = input; + nstring.erase(std::remove(nstring.begin(), nstring.end(), '_'), nstring.end()); + nstring.erase(std::remove(nstring.begin(), nstring.end(), '\''), nstring.end()); + return integral_conversion(nstring, output); + } + if(input.compare(0, 2, "0o") == 0) { + val = nullptr; + errno = 0; + output_ll = std::strtoull(input.c_str() + 2, &val, 8); + if(errno == ERANGE) { + return false; + } + output = static_cast(output_ll); + return (val == (input.c_str() + input.size()) && static_cast(output) == output_ll); + } + if(input.compare(0, 2, "0b") == 0) { + val = nullptr; + errno = 0; + output_ll = std::strtoull(input.c_str() + 2, &val, 2); + if(errno == ERANGE) { + return false; + } + output = static_cast(output_ll); + return (val == (input.c_str() + input.size()) && static_cast(output) == output_ll); + } + return false; +} + +/// Convert to a signed integral +template ::value, detail::enabler> = detail::dummy> +bool integral_conversion(const std::string &input, T &output) noexcept { + if(input.empty()) { + return false; + } + char *val = nullptr; + errno = 0; + std::int64_t output_ll = std::strtoll(input.c_str(), &val, 0); + if(errno == ERANGE) { + return false; + } + output = static_cast(output_ll); + if(val == (input.c_str() + input.size()) && static_cast(output) == output_ll) { + return true; + } + if(input == "true") { + // this is to deal with a few oddities with flags and wrapper int types + output = static_cast(1); + return true; + } + // remove separators + if(input.find_first_of("_'") != std::string::npos) { + std::string nstring = input; + nstring.erase(std::remove(nstring.begin(), nstring.end(), '_'), nstring.end()); + nstring.erase(std::remove(nstring.begin(), nstring.end(), '\''), nstring.end()); + return integral_conversion(nstring, output); + } + if(input.compare(0, 2, "0o") == 0) { + val = nullptr; + errno = 0; + output_ll = std::strtoll(input.c_str() + 2, &val, 8); + if(errno == ERANGE) { + return false; + } + output = static_cast(output_ll); + return (val == (input.c_str() + input.size()) && static_cast(output) == output_ll); + } + if(input.compare(0, 2, "0b") == 0) { + val = nullptr; + errno = 0; + output_ll = std::strtoll(input.c_str() + 2, &val, 2); + if(errno == ERANGE) { + return false; + } + output = static_cast(output_ll); + return (val == (input.c_str() + input.size()) && static_cast(output) == output_ll); + } + return false; +} + +/// Convert a flag into an integer value typically binary flags sets errno to nonzero if conversion failed +inline std::int64_t to_flag_value(std::string val) noexcept { + static const std::string trueString("true"); + static const std::string falseString("false"); + if(val == trueString) { + return 1; + } + if(val == falseString) { + return -1; + } + val = detail::to_lower(val); + std::int64_t ret = 0; + if(val.size() == 1) { + if(val[0] >= '1' && val[0] <= '9') { + return (static_cast(val[0]) - '0'); + } + switch(val[0]) { + case '0': + case 'f': + case 'n': + case '-': + ret = -1; + break; + case 't': + case 'y': + case '+': + ret = 1; + break; + default: + errno = EINVAL; + return -1; + } + return ret; + } + if(val == trueString || val == "on" || val == "yes" || val == "enable") { + ret = 1; + } else if(val == falseString || val == "off" || val == "no" || val == "disable") { + ret = -1; + } else { + char *loc_ptr{nullptr}; + ret = std::strtoll(val.c_str(), &loc_ptr, 0); + if(loc_ptr != (val.c_str() + val.size()) && errno == 0) { + errno = EINVAL; + } + } + return ret; +} + +/// Integer conversion +template ::value == object_category::integral_value || + classify_object::value == object_category::unsigned_integral, + detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + return integral_conversion(input, output); +} + +/// char values +template ::value == object_category::char_value, detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + if(input.size() == 1) { + output = static_cast(input[0]); + return true; + } + return integral_conversion(input, output); +} + +/// Boolean values +template ::value == object_category::boolean_value, detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + errno = 0; + auto out = to_flag_value(input); + if(errno == 0) { + output = (out > 0); + } else if(errno == ERANGE) { + output = (input[0] != '-'); + } else { + return false; + } + return true; +} + +/// Floats +template ::value == object_category::floating_point, detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + if(input.empty()) { + return false; + } + char *val = nullptr; + auto output_ld = std::strtold(input.c_str(), &val); + output = static_cast(output_ld); + if(val == (input.c_str() + input.size())) { + return true; + } + // remove separators + if(input.find_first_of("_'") != std::string::npos) { + std::string nstring = input; + nstring.erase(std::remove(nstring.begin(), nstring.end(), '_'), nstring.end()); + nstring.erase(std::remove(nstring.begin(), nstring.end(), '\''), nstring.end()); + return lexical_cast(nstring, output); + } + return false; +} + +/// complex +template ::value == object_category::complex_number, detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + using XC = typename wrapped_type::type; + XC x{0.0}, y{0.0}; + auto str1 = input; + bool worked = false; + auto nloc = str1.find_last_of("+-"); + if(nloc != std::string::npos && nloc > 0) { + worked = lexical_cast(str1.substr(0, nloc), x); + str1 = str1.substr(nloc); + if(str1.back() == 'i' || str1.back() == 'j') + str1.pop_back(); + worked = worked && lexical_cast(str1, y); + } else { + if(str1.back() == 'i' || str1.back() == 'j') { + str1.pop_back(); + worked = lexical_cast(str1, y); + x = XC{0}; + } else { + worked = lexical_cast(str1, x); + y = XC{0}; + } + } + if(worked) { + output = T{x, y}; + return worked; + } + return from_stream(input, output); +} + +/// String and similar direct assignment +template ::value == object_category::string_assignable, detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + output = input; + return true; +} + +/// String and similar constructible and copy assignment +template < + typename T, + enable_if_t::value == object_category::string_constructible, detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + output = T(input); + return true; +} + +/// Wide strings +template < + typename T, + enable_if_t::value == object_category::wstring_assignable, detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + output = widen(input); + return true; +} + +template < + typename T, + enable_if_t::value == object_category::wstring_constructible, detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + output = T{widen(input)}; + return true; +} + +/// Enumerations +template ::value == object_category::enumeration, detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + typename std::underlying_type::type val; + if(!integral_conversion(input, val)) { + return false; + } + output = static_cast(val); + return true; +} + +/// wrapper types +template ::value == object_category::wrapper_value && + std::is_assignable::value, + detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + typename T::value_type val; + if(lexical_cast(input, val)) { + output = val; + return true; + } + return from_stream(input, output); +} + +template ::value == object_category::wrapper_value && + !std::is_assignable::value && std::is_assignable::value, + detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + typename T::value_type val; + if(lexical_cast(input, val)) { + output = T{val}; + return true; + } + return from_stream(input, output); +} + +/// Assignable from double or int +template < + typename T, + enable_if_t::value == object_category::number_constructible, detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + int val = 0; + if(integral_conversion(input, val)) { + output = T(val); + return true; + } + + double dval = 0.0; + if(lexical_cast(input, dval)) { + output = T{dval}; + return true; + } + + return from_stream(input, output); +} + +/// Assignable from int +template < + typename T, + enable_if_t::value == object_category::integer_constructible, detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + int val = 0; + if(integral_conversion(input, val)) { + output = T(val); + return true; + } + return from_stream(input, output); +} + +/// Assignable from double +template < + typename T, + enable_if_t::value == object_category::double_constructible, detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + double val = 0.0; + if(lexical_cast(input, val)) { + output = T{val}; + return true; + } + return from_stream(input, output); +} + +/// Non-string convertible from an int +template ::value == object_category::other && std::is_assignable::value, + detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + int val = 0; + if(integral_conversion(input, val)) { +#ifdef _MSC_VER +#pragma warning(push) +#pragma warning(disable : 4800) +#endif + // with Atomic this could produce a warning due to the conversion but if atomic gets here it is an old style + // so will most likely still work + output = val; +#ifdef _MSC_VER +#pragma warning(pop) +#endif + return true; + } + // LCOV_EXCL_START + // This version of cast is only used for odd cases in an older compilers the fail over + // from_stream is tested elsewhere an not relevant for coverage here + return from_stream(input, output); + // LCOV_EXCL_STOP +} + +/// Non-string parsable by a stream +template ::value == object_category::other && !std::is_assignable::value && + is_istreamable::value, + detail::enabler> = detail::dummy> +bool lexical_cast(const std::string &input, T &output) { + return from_stream(input, output); +} + +/// Fallback overload that prints a human-readable error for types that we don't recognize and that don't have a +/// user-supplied lexical_cast overload. +template ::value == object_category::other && !std::is_assignable::value && + !is_istreamable::value && !adl_detail::is_lexical_castable::value, + detail::enabler> = detail::dummy> +bool lexical_cast(const std::string & /*input*/, T & /*output*/) { + static_assert(!std::is_same::value, // Can't just write false here. + "option object type must have a lexical cast overload or streaming input operator(>>) defined, if it " + "is convertible from another type use the add_option(...) with XC being the known type"); + return false; +} + +/// Assign a value through lexical cast operations +/// Strings can be empty so we need to do a little different +template ::value && + (classify_object::value == object_category::string_assignable || + classify_object::value == object_category::string_constructible || + classify_object::value == object_category::wstring_assignable || + classify_object::value == object_category::wstring_constructible), + detail::enabler> = detail::dummy> +bool lexical_assign(const std::string &input, AssignTo &output) { + return lexical_cast(input, output); +} + +/// Assign a value through lexical cast operations +template ::value && std::is_assignable::value && + classify_object::value != object_category::string_assignable && + classify_object::value != object_category::string_constructible && + classify_object::value != object_category::wstring_assignable && + classify_object::value != object_category::wstring_constructible, + detail::enabler> = detail::dummy> +bool lexical_assign(const std::string &input, AssignTo &output) { + if(input.empty()) { + output = AssignTo{}; + return true; + } + + return lexical_cast(input, output); +} + +/// Assign a value through lexical cast operations +template ::value && !std::is_assignable::value && + classify_object::value == object_category::wrapper_value, + detail::enabler> = detail::dummy> +bool lexical_assign(const std::string &input, AssignTo &output) { + if(input.empty()) { + typename AssignTo::value_type emptyVal{}; + output = emptyVal; + return true; + } + return lexical_cast(input, output); +} + +/// Assign a value through lexical cast operations for int compatible values +/// mainly for atomic operations on some compilers +template ::value && !std::is_assignable::value && + classify_object::value != object_category::wrapper_value && + std::is_assignable::value, + detail::enabler> = detail::dummy> +bool lexical_assign(const std::string &input, AssignTo &output) { + if(input.empty()) { + output = 0; + return true; + } + int val{0}; + if(lexical_cast(input, val)) { +#if defined(__clang__) +/* on some older clang compilers */ +#pragma clang diagnostic push +#pragma clang diagnostic ignored "-Wsign-conversion" +#endif + output = val; +#if defined(__clang__) +#pragma clang diagnostic pop +#endif + return true; + } + return false; +} + +/// Assign a value converted from a string in lexical cast to the output value directly +template ::value && std::is_assignable::value, + detail::enabler> = detail::dummy> +bool lexical_assign(const std::string &input, AssignTo &output) { + ConvertTo val{}; + bool parse_result = (!input.empty()) ? lexical_cast(input, val) : true; + if(parse_result) { + output = val; + } + return parse_result; +} + +/// Assign a value from a lexical cast through constructing a value and move assigning it +template < + typename AssignTo, + typename ConvertTo, + enable_if_t::value && !std::is_assignable::value && + std::is_move_assignable::value, + detail::enabler> = detail::dummy> +bool lexical_assign(const std::string &input, AssignTo &output) { + ConvertTo val{}; + bool parse_result = input.empty() ? true : lexical_cast(input, val); + if(parse_result) { + output = AssignTo(val); // use () form of constructor to allow some implicit conversions + } + return parse_result; +} + +/// primary lexical conversion operation, 1 string to 1 type of some kind +template ::value <= object_category::other && + classify_object::value <= object_category::wrapper_value, + detail::enabler> = detail::dummy> +bool lexical_conversion(const std::vector &strings, AssignTo &output) { + return lexical_assign(strings[0], output); +} + +/// Lexical conversion if there is only one element but the conversion type is for two, then call a two element +/// constructor +template ::value <= 2) && expected_count::value == 1 && + is_tuple_like::value && type_count_base::value == 2, + detail::enabler> = detail::dummy> +bool lexical_conversion(const std::vector &strings, AssignTo &output) { + // the remove const is to handle pair types coming from a container + using FirstType = typename std::remove_const::type>::type; + using SecondType = typename std::tuple_element<1, ConvertTo>::type; + FirstType v1; + SecondType v2; + bool retval = lexical_assign(strings[0], v1); + retval = retval && lexical_assign((strings.size() > 1) ? strings[1] : std::string{}, v2); + if(retval) { + output = AssignTo{v1, v2}; + } + return retval; +} + +/// Lexical conversion of a container types of single elements +template ::value && is_mutable_container::value && + type_count::value == 1, + detail::enabler> = detail::dummy> +bool lexical_conversion(const std::vector &strings, AssignTo &output) { + output.erase(output.begin(), output.end()); + if(strings.empty()) { + return true; + } + if(strings.size() == 1 && strings[0] == "{}") { + return true; + } + bool skip_remaining = false; + if(strings.size() == 2 && strings[0] == "{}" && is_separator(strings[1])) { + skip_remaining = true; + } + for(const auto &elem : strings) { + typename AssignTo::value_type out; + bool retval = lexical_assign(elem, out); + if(!retval) { + return false; + } + output.insert(output.end(), std::move(out)); + if(skip_remaining) { + break; + } + } + return (!output.empty()); +} + +/// Lexical conversion for complex types +template ::value, detail::enabler> = detail::dummy> +bool lexical_conversion(const std::vector &strings, AssignTo &output) { + + if(strings.size() >= 2 && !strings[1].empty()) { + using XC2 = typename wrapped_type::type; + XC2 x{0.0}, y{0.0}; + auto str1 = strings[1]; + if(str1.back() == 'i' || str1.back() == 'j') { + str1.pop_back(); + } + auto worked = lexical_cast(strings[0], x) && lexical_cast(str1, y); + if(worked) { + output = ConvertTo{x, y}; + } + return worked; + } + return lexical_assign(strings[0], output); +} + +/// Conversion to a vector type using a particular single type as the conversion type +template ::value && (expected_count::value == 1) && + (type_count::value == 1), + detail::enabler> = detail::dummy> +bool lexical_conversion(const std::vector &strings, AssignTo &output) { + bool retval = true; + output.clear(); + output.reserve(strings.size()); + for(const auto &elem : strings) { + + output.emplace_back(); + retval = retval && lexical_assign(elem, output.back()); + } + return (!output.empty()) && retval; +} + +// forward declaration + +/// Lexical conversion of a container types with conversion type of two elements +template ::value && is_mutable_container::value && + type_count_base::value == 2, + detail::enabler> = detail::dummy> +bool lexical_conversion(std::vector strings, AssignTo &output); + +/// Lexical conversion of a vector types with type_size >2 forward declaration +template ::value && is_mutable_container::value && + type_count_base::value != 2 && + ((type_count::value > 2) || + (type_count::value > type_count_base::value)), + detail::enabler> = detail::dummy> +bool lexical_conversion(const std::vector &strings, AssignTo &output); + +/// Conversion for tuples +template ::value && is_tuple_like::value && + (type_count_base::value != type_count::value || + type_count::value > 2), + detail::enabler> = detail::dummy> +bool lexical_conversion(const std::vector &strings, AssignTo &output); // forward declaration + +/// Conversion for operations where the assigned type is some class but the conversion is a mutable container or large +/// tuple +template ::value && !is_mutable_container::value && + classify_object::value != object_category::wrapper_value && + (is_mutable_container::value || type_count::value > 2), + detail::enabler> = detail::dummy> +bool lexical_conversion(const std::vector &strings, AssignTo &output) { + + if(strings.size() > 1 || (!strings.empty() && !(strings.front().empty()))) { + ConvertTo val; + auto retval = lexical_conversion(strings, val); + output = AssignTo{val}; + return retval; + } + output = AssignTo{}; + return true; +} + +/// function template for converting tuples if the static Index is greater than the tuple size +template +inline typename std::enable_if<(I >= type_count_base::value), bool>::type +tuple_conversion(const std::vector &, AssignTo &) { + return true; +} + +/// Conversion of a tuple element where the type size ==1 and not a mutable container +template +inline typename std::enable_if::value && type_count::value == 1, bool>::type +tuple_type_conversion(std::vector &strings, AssignTo &output) { + auto retval = lexical_assign(strings[0], output); + strings.erase(strings.begin()); + return retval; +} + +/// Conversion of a tuple element where the type size !=1 but the size is fixed and not a mutable container +template +inline typename std::enable_if::value && (type_count::value > 1) && + type_count::value == type_count_min::value, + bool>::type +tuple_type_conversion(std::vector &strings, AssignTo &output) { + auto retval = lexical_conversion(strings, output); + strings.erase(strings.begin(), strings.begin() + type_count::value); + return retval; +} + +/// Conversion of a tuple element where the type is a mutable container or a type with different min and max type sizes +template +inline typename std::enable_if::value || + type_count::value != type_count_min::value, + bool>::type +tuple_type_conversion(std::vector &strings, AssignTo &output) { + + std::size_t index{subtype_count_min::value}; + const std::size_t mx_count{subtype_count::value}; + const std::size_t mx{(std::min)(mx_count, strings.size() - 1)}; + + while(index < mx) { + if(is_separator(strings[index])) { + break; + } + ++index; + } + bool retval = lexical_conversion( + std::vector(strings.begin(), strings.begin() + static_cast(index)), output); + if(strings.size() > index) { + strings.erase(strings.begin(), strings.begin() + static_cast(index) + 1); + } else { + strings.clear(); + } + return retval; +} + +/// Tuple conversion operation +template +inline typename std::enable_if<(I < type_count_base::value), bool>::type +tuple_conversion(std::vector strings, AssignTo &output) { + bool retval = true; + using ConvertToElement = typename std:: + conditional::value, typename std::tuple_element::type, ConvertTo>::type; + if(!strings.empty()) { + retval = retval && tuple_type_conversion::type, ConvertToElement>( + strings, std::get(output)); + } + retval = retval && tuple_conversion(std::move(strings), output); + return retval; +} + +/// Lexical conversion of a container types with tuple elements of size 2 +template ::value && is_mutable_container::value && + type_count_base::value == 2, + detail::enabler>> +bool lexical_conversion(std::vector strings, AssignTo &output) { + output.clear(); + while(!strings.empty()) { + + typename std::remove_const::type>::type v1; + typename std::tuple_element<1, typename ConvertTo::value_type>::type v2; + bool retval = tuple_type_conversion(strings, v1); + if(!strings.empty()) { + retval = retval && tuple_type_conversion(strings, v2); + } + if(retval) { + output.insert(output.end(), typename AssignTo::value_type{v1, v2}); + } else { + return false; + } + } + return (!output.empty()); +} + +/// lexical conversion of tuples with type count>2 or tuples of types of some element with a type size>=2 +template ::value && is_tuple_like::value && + (type_count_base::value != type_count::value || + type_count::value > 2), + detail::enabler>> +bool lexical_conversion(const std::vector &strings, AssignTo &output) { + static_assert( + !is_tuple_like::value || type_count_base::value == type_count_base::value, + "if the conversion type is defined as a tuple it must be the same size as the type you are converting to"); + return tuple_conversion(strings, output); +} + +/// Lexical conversion of a vector types for everything but tuples of two elements and types of size 1 +template ::value && is_mutable_container::value && + type_count_base::value != 2 && + ((type_count::value > 2) || + (type_count::value > type_count_base::value)), + detail::enabler>> +bool lexical_conversion(const std::vector &strings, AssignTo &output) { + bool retval = true; + output.clear(); + std::vector temp; + std::size_t ii{0}; + std::size_t icount{0}; + std::size_t xcm{type_count::value}; + auto ii_max = strings.size(); + while(ii < ii_max) { + temp.push_back(strings[ii]); + ++ii; + ++icount; + if(icount == xcm || is_separator(temp.back()) || ii == ii_max) { + if(static_cast(xcm) > type_count_min::value && is_separator(temp.back())) { + temp.pop_back(); + } + typename AssignTo::value_type temp_out; + retval = retval && + lexical_conversion(temp, temp_out); + temp.clear(); + if(!retval) { + return false; + } + output.insert(output.end(), std::move(temp_out)); + icount = 0; + } + } + return retval; +} + +/// conversion for wrapper types +template ::value == object_category::wrapper_value && + std::is_assignable::value, + detail::enabler> = detail::dummy> +bool lexical_conversion(const std::vector &strings, AssignTo &output) { + if(strings.empty() || strings.front().empty()) { + output = ConvertTo{}; + return true; + } + typename ConvertTo::value_type val; + if(lexical_conversion(strings, val)) { + output = ConvertTo{val}; + return true; + } + return false; +} + +/// conversion for wrapper types +template ::value == object_category::wrapper_value && + !std::is_assignable::value, + detail::enabler> = detail::dummy> +bool lexical_conversion(const std::vector &strings, AssignTo &output) { + using ConvertType = typename ConvertTo::value_type; + if(strings.empty() || strings.front().empty()) { + output = ConvertType{}; + return true; + } + ConvertType val; + if(lexical_conversion(strings, val)) { + output = val; + return true; + } + return false; +} + +/// Sum a vector of strings +inline std::string sum_string_vector(const std::vector &values) { + double val{0.0}; + bool fail{false}; + std::string output; + for(const auto &arg : values) { + double tv{0.0}; + auto comp = lexical_cast(arg, tv); + if(!comp) { + errno = 0; + auto fv = detail::to_flag_value(arg); + fail = (errno != 0); + if(fail) { + break; + } + tv = static_cast(fv); + } + val += tv; + } + if(fail) { + for(const auto &arg : values) { + output.append(arg); + } + } else { + std::ostringstream out; + out.precision(16); + out << val; + output = out.str(); + } + return output; +} + +} // namespace detail + + + +namespace detail { + +// Returns false if not a short option. Otherwise, sets opt name and rest and returns true +CLI11_INLINE bool split_short(const std::string ¤t, std::string &name, std::string &rest); + +// Returns false if not a long option. Otherwise, sets opt name and other side of = and returns true +CLI11_INLINE bool split_long(const std::string ¤t, std::string &name, std::string &value); + +// Returns false if not a windows style option. Otherwise, sets opt name and value and returns true +CLI11_INLINE bool split_windows_style(const std::string ¤t, std::string &name, std::string &value); + +// Splits a string into multiple long and short names +CLI11_INLINE std::vector split_names(std::string current); + +/// extract default flag values either {def} or starting with a ! +CLI11_INLINE std::vector> get_default_flag_values(const std::string &str); + +/// Get a vector of short names, one of long names, and a single name +CLI11_INLINE std::tuple, std::vector, std::string> +get_names(const std::vector &input); + +} // namespace detail + + + +namespace detail { + +CLI11_INLINE bool split_short(const std::string ¤t, std::string &name, std::string &rest) { + if(current.size() > 1 && current[0] == '-' && valid_first_char(current[1])) { + name = current.substr(1, 1); + rest = current.substr(2); + return true; + } + return false; +} + +CLI11_INLINE bool split_long(const std::string ¤t, std::string &name, std::string &value) { + if(current.size() > 2 && current.compare(0, 2, "--") == 0 && valid_first_char(current[2])) { + auto loc = current.find_first_of('='); + if(loc != std::string::npos) { + name = current.substr(2, loc - 2); + value = current.substr(loc + 1); + } else { + name = current.substr(2); + value = ""; + } + return true; + } + return false; +} + +CLI11_INLINE bool split_windows_style(const std::string ¤t, std::string &name, std::string &value) { + if(current.size() > 1 && current[0] == '/' && valid_first_char(current[1])) { + auto loc = current.find_first_of(':'); + if(loc != std::string::npos) { + name = current.substr(1, loc - 1); + value = current.substr(loc + 1); + } else { + name = current.substr(1); + value = ""; + } + return true; + } + return false; +} + +CLI11_INLINE std::vector split_names(std::string current) { + std::vector output; + std::size_t val = 0; + while((val = current.find(',')) != std::string::npos) { + output.push_back(trim_copy(current.substr(0, val))); + current = current.substr(val + 1); + } + output.push_back(trim_copy(current)); + return output; +} + +CLI11_INLINE std::vector> get_default_flag_values(const std::string &str) { + std::vector flags = split_names(str); + flags.erase(std::remove_if(flags.begin(), + flags.end(), + [](const std::string &name) { + return ((name.empty()) || (!(((name.find_first_of('{') != std::string::npos) && + (name.back() == '}')) || + (name[0] == '!')))); + }), + flags.end()); + std::vector> output; + output.reserve(flags.size()); + for(auto &flag : flags) { + auto def_start = flag.find_first_of('{'); + std::string defval = "false"; + if((def_start != std::string::npos) && (flag.back() == '}')) { + defval = flag.substr(def_start + 1); + defval.pop_back(); + flag.erase(def_start, std::string::npos); // NOLINT(readability-suspicious-call-argument) + } + flag.erase(0, flag.find_first_not_of("-!")); + output.emplace_back(flag, defval); + } + return output; +} + +CLI11_INLINE std::tuple, std::vector, std::string> +get_names(const std::vector &input) { + + std::vector short_names; + std::vector long_names; + std::string pos_name; + for(std::string name : input) { + if(name.length() == 0) { + continue; + } + if(name.length() > 1 && name[0] == '-' && name[1] != '-') { + if(name.length() == 2 && valid_first_char(name[1])) + short_names.emplace_back(1, name[1]); + else if(name.length() > 2) + throw BadNameString::MissingDash(name); + else + throw BadNameString::OneCharName(name); + } else if(name.length() > 2 && name.substr(0, 2) == "--") { + name = name.substr(2); + if(valid_name_string(name)) + long_names.push_back(name); + else + throw BadNameString::BadLongName(name); + } else if(name == "-" || name == "--") { + throw BadNameString::DashesOnly(name); + } else { + if(!pos_name.empty()) + throw BadNameString::MultiPositionalNames(name); + if(valid_name_string(name)) { + pos_name = name; + } else { + throw BadNameString::BadPositionalName(name); + } + } + } + return std::make_tuple(short_names, long_names, pos_name); +} + +} // namespace detail + + + +class App; + +/// Holds values to load into Options +struct ConfigItem { + /// This is the list of parents + std::vector parents{}; + + /// This is the name + std::string name{}; + /// Listing of inputs + std::vector inputs{}; + + /// The list of parents and name joined by "." + CLI11_NODISCARD std::string fullname() const { + std::vector tmp = parents; + tmp.emplace_back(name); + return detail::join(tmp, "."); + } +}; + +/// This class provides a converter for configuration files. +class Config { + protected: + std::vector items{}; + + public: + /// Convert an app into a configuration + virtual std::string to_config(const App *, bool, bool, std::string) const = 0; + + /// Convert a configuration into an app + virtual std::vector from_config(std::istream &) const = 0; + + /// Get a flag value + CLI11_NODISCARD virtual std::string to_flag(const ConfigItem &item) const { + if(item.inputs.size() == 1) { + return item.inputs.at(0); + } + if(item.inputs.empty()) { + return "{}"; + } + throw ConversionError::TooManyInputsFlag(item.fullname()); // LCOV_EXCL_LINE + } + + /// Parse a config file, throw an error (ParseError:ConfigParseError or FileError) on failure + CLI11_NODISCARD std::vector from_file(const std::string &name) const { + std::ifstream input{name}; + if(!input.good()) + throw FileError::Missing(name); + + return from_config(input); + } + + /// Virtual destructor + virtual ~Config() = default; +}; + +/// This converter works with INI/TOML files; to write INI files use ConfigINI +class ConfigBase : public Config { + protected: + /// the character used for comments + char commentChar = '#'; + /// the character used to start an array '\0' is a default to not use + char arrayStart = '['; + /// the character used to end an array '\0' is a default to not use + char arrayEnd = ']'; + /// the character used to separate elements in an array + char arraySeparator = ','; + /// the character used separate the name from the value + char valueDelimiter = '='; + /// the character to use around strings + char stringQuote = '"'; + /// the character to use around single characters and literal strings + char literalQuote = '\''; + /// the maximum number of layers to allow + uint8_t maximumLayers{255}; + /// the separator used to separator parent layers + char parentSeparatorChar{'.'}; + /// Specify the configuration index to use for arrayed sections + int16_t configIndex{-1}; + /// Specify the configuration section that should be used + std::string configSection{}; + + public: + std::string + to_config(const App * /*app*/, bool default_also, bool write_description, std::string prefix) const override; + + std::vector from_config(std::istream &input) const override; + /// Specify the configuration for comment characters + ConfigBase *comment(char cchar) { + commentChar = cchar; + return this; + } + /// Specify the start and end characters for an array + ConfigBase *arrayBounds(char aStart, char aEnd) { + arrayStart = aStart; + arrayEnd = aEnd; + return this; + } + /// Specify the delimiter character for an array + ConfigBase *arrayDelimiter(char aSep) { + arraySeparator = aSep; + return this; + } + /// Specify the delimiter between a name and value + ConfigBase *valueSeparator(char vSep) { + valueDelimiter = vSep; + return this; + } + /// Specify the quote characters used around strings and literal strings + ConfigBase *quoteCharacter(char qString, char literalChar) { + stringQuote = qString; + literalQuote = literalChar; + return this; + } + /// Specify the maximum number of parents + ConfigBase *maxLayers(uint8_t layers) { + maximumLayers = layers; + return this; + } + /// Specify the separator to use for parent layers + ConfigBase *parentSeparator(char sep) { + parentSeparatorChar = sep; + return this; + } + /// get a reference to the configuration section + std::string §ionRef() { return configSection; } + /// get the section + CLI11_NODISCARD const std::string §ion() const { return configSection; } + /// specify a particular section of the configuration file to use + ConfigBase *section(const std::string §ionName) { + configSection = sectionName; + return this; + } + + /// get a reference to the configuration index + int16_t &indexRef() { return configIndex; } + /// get the section index + CLI11_NODISCARD int16_t index() const { return configIndex; } + /// specify a particular index in the section to use (-1) for all sections to use + ConfigBase *index(int16_t sectionIndex) { + configIndex = sectionIndex; + return this; + } +}; + +/// the default Config is the TOML file format +using ConfigTOML = ConfigBase; + +/// ConfigINI generates a "standard" INI compliant output +class ConfigINI : public ConfigTOML { + + public: + ConfigINI() { + commentChar = ';'; + arrayStart = '\0'; + arrayEnd = '\0'; + arraySeparator = ' '; + valueDelimiter = '='; + } +}; + + + +class Option; + +/// @defgroup validator_group Validators + +/// @brief Some validators that are provided +/// +/// These are simple `std::string(const std::string&)` validators that are useful. They return +/// a string if the validation fails. A custom struct is provided, as well, with the same user +/// semantics, but with the ability to provide a new type name. +/// @{ + +/// +class Validator { + protected: + /// This is the description function, if empty the description_ will be used + std::function desc_function_{[]() { return std::string{}; }}; + + /// This is the base function that is to be called. + /// Returns a string error message if validation fails. + std::function func_{[](std::string &) { return std::string{}; }}; + /// The name for search purposes of the Validator + std::string name_{}; + /// A Validator will only apply to an indexed value (-1 is all elements) + int application_index_ = -1; + /// Enable for Validator to allow it to be disabled if need be + bool active_{true}; + /// specify that a validator should not modify the input + bool non_modifying_{false}; + + Validator(std::string validator_desc, std::function func) + : desc_function_([validator_desc]() { return validator_desc; }), func_(std::move(func)) {} + + public: + Validator() = default; + /// Construct a Validator with just the description string + explicit Validator(std::string validator_desc) : desc_function_([validator_desc]() { return validator_desc; }) {} + /// Construct Validator from basic information + Validator(std::function op, std::string validator_desc, std::string validator_name = "") + : desc_function_([validator_desc]() { return validator_desc; }), func_(std::move(op)), + name_(std::move(validator_name)) {} + /// Set the Validator operation function + Validator &operation(std::function op) { + func_ = std::move(op); + return *this; + } + /// This is the required operator for a Validator - provided to help + /// users (CLI11 uses the member `func` directly) + std::string operator()(std::string &str) const; + + /// This is the required operator for a Validator - provided to help + /// users (CLI11 uses the member `func` directly) + std::string operator()(const std::string &str) const { + std::string value = str; + return (active_) ? func_(value) : std::string{}; + } + + /// Specify the type string + Validator &description(std::string validator_desc) { + desc_function_ = [validator_desc]() { return validator_desc; }; + return *this; + } + /// Specify the type string + CLI11_NODISCARD Validator description(std::string validator_desc) const; + + /// Generate type description information for the Validator + CLI11_NODISCARD std::string get_description() const { + if(active_) { + return desc_function_(); + } + return std::string{}; + } + /// Specify the type string + Validator &name(std::string validator_name) { + name_ = std::move(validator_name); + return *this; + } + /// Specify the type string + CLI11_NODISCARD Validator name(std::string validator_name) const { + Validator newval(*this); + newval.name_ = std::move(validator_name); + return newval; + } + /// Get the name of the Validator + CLI11_NODISCARD const std::string &get_name() const { return name_; } + /// Specify whether the Validator is active or not + Validator &active(bool active_val = true) { + active_ = active_val; + return *this; + } + /// Specify whether the Validator is active or not + CLI11_NODISCARD Validator active(bool active_val = true) const { + Validator newval(*this); + newval.active_ = active_val; + return newval; + } + + /// Specify whether the Validator can be modifying or not + Validator &non_modifying(bool no_modify = true) { + non_modifying_ = no_modify; + return *this; + } + /// Specify the application index of a validator + Validator &application_index(int app_index) { + application_index_ = app_index; + return *this; + } + /// Specify the application index of a validator + CLI11_NODISCARD Validator application_index(int app_index) const { + Validator newval(*this); + newval.application_index_ = app_index; + return newval; + } + /// Get the current value of the application index + CLI11_NODISCARD int get_application_index() const { return application_index_; } + /// Get a boolean if the validator is active + CLI11_NODISCARD bool get_active() const { return active_; } + + /// Get a boolean if the validator is allowed to modify the input returns true if it can modify the input + CLI11_NODISCARD bool get_modifying() const { return !non_modifying_; } + + /// Combining validators is a new validator. Type comes from left validator if function, otherwise only set if the + /// same. + Validator operator&(const Validator &other) const; + + /// Combining validators is a new validator. Type comes from left validator if function, otherwise only set if the + /// same. + Validator operator|(const Validator &other) const; + + /// Create a validator that fails when a given validator succeeds + Validator operator!() const; + + private: + void _merge_description(const Validator &val1, const Validator &val2, const std::string &merger); +}; + +/// Class wrapping some of the accessors of Validator +class CustomValidator : public Validator { + public: +}; +// The implementation of the built in validators is using the Validator class; +// the user is only expected to use the const (static) versions (since there's no setup). +// Therefore, this is in detail. +namespace detail { + +/// CLI enumeration of different file types +enum class path_type { nonexistent, file, directory }; + +/// get the type of the path from a file name +CLI11_INLINE path_type check_path(const char *file) noexcept; + +/// Check for an existing file (returns error message if check fails) +class ExistingFileValidator : public Validator { + public: + ExistingFileValidator(); +}; + +/// Check for an existing directory (returns error message if check fails) +class ExistingDirectoryValidator : public Validator { + public: + ExistingDirectoryValidator(); +}; + +/// Check for an existing path +class ExistingPathValidator : public Validator { + public: + ExistingPathValidator(); +}; + +/// Check for an non-existing path +class NonexistentPathValidator : public Validator { + public: + NonexistentPathValidator(); +}; + +/// Validate the given string is a legal ipv4 address +class IPV4Validator : public Validator { + public: + IPV4Validator(); +}; + +class EscapedStringTransformer : public Validator { + public: + EscapedStringTransformer(); +}; + +} // namespace detail + +// Static is not needed here, because global const implies static. + +/// Check for existing file (returns error message if check fails) +const detail::ExistingFileValidator ExistingFile; + +/// Check for an existing directory (returns error message if check fails) +const detail::ExistingDirectoryValidator ExistingDirectory; + +/// Check for an existing path +const detail::ExistingPathValidator ExistingPath; + +/// Check for an non-existing path +const detail::NonexistentPathValidator NonexistentPath; + +/// Check for an IP4 address +const detail::IPV4Validator ValidIPV4; + +/// convert escaped characters into their associated values +const detail::EscapedStringTransformer EscapedString; + +/// Validate the input as a particular type +template class TypeValidator : public Validator { + public: + explicit TypeValidator(const std::string &validator_name) + : Validator(validator_name, [](std::string &input_string) { + using CLI::detail::lexical_cast; + auto val = DesiredType(); + if(!lexical_cast(input_string, val)) { + return std::string("Failed parsing ") + input_string + " as a " + detail::type_name(); + } + return std::string(); + }) {} + TypeValidator() : TypeValidator(detail::type_name()) {} +}; + +/// Check for a number +const TypeValidator Number("NUMBER"); + +/// Modify a path if the file is a particular default location, can be used as Check or transform +/// with the error return optionally disabled +class FileOnDefaultPath : public Validator { + public: + explicit FileOnDefaultPath(std::string default_path, bool enableErrorReturn = true); +}; + +/// Produce a range (factory). Min and max are inclusive. +class Range : public Validator { + public: + /// This produces a range with min and max inclusive. + /// + /// Note that the constructor is templated, but the struct is not, so C++17 is not + /// needed to provide nice syntax for Range(a,b). + template + Range(T min_val, T max_val, const std::string &validator_name = std::string{}) : Validator(validator_name) { + if(validator_name.empty()) { + std::stringstream out; + out << detail::type_name() << " in [" << min_val << " - " << max_val << "]"; + description(out.str()); + } + + func_ = [min_val, max_val](std::string &input) { + using CLI::detail::lexical_cast; + T val; + bool converted = lexical_cast(input, val); + if((!converted) || (val < min_val || val > max_val)) { + std::stringstream out; + out << "Value " << input << " not in range ["; + out << min_val << " - " << max_val << "]"; + return out.str(); + } + return std::string{}; + }; + } + + /// Range of one value is 0 to value + template + explicit Range(T max_val, const std::string &validator_name = std::string{}) + : Range(static_cast(0), max_val, validator_name) {} +}; + +/// Check for a non negative number +const Range NonNegativeNumber((std::numeric_limits::max)(), "NONNEGATIVE"); + +/// Check for a positive valued number (val>0.0), ::min here is the smallest positive number +const Range PositiveNumber((std::numeric_limits::min)(), (std::numeric_limits::max)(), "POSITIVE"); + +/// Produce a bounded range (factory). Min and max are inclusive. +class Bound : public Validator { + public: + /// This bounds a value with min and max inclusive. + /// + /// Note that the constructor is templated, but the struct is not, so C++17 is not + /// needed to provide nice syntax for Range(a,b). + template Bound(T min_val, T max_val) { + std::stringstream out; + out << detail::type_name() << " bounded to [" << min_val << " - " << max_val << "]"; + description(out.str()); + + func_ = [min_val, max_val](std::string &input) { + using CLI::detail::lexical_cast; + T val; + bool converted = lexical_cast(input, val); + if(!converted) { + return std::string("Value ") + input + " could not be converted"; + } + if(val < min_val) + input = detail::to_string(min_val); + else if(val > max_val) + input = detail::to_string(max_val); + + return std::string{}; + }; + } + + /// Range of one value is 0 to value + template explicit Bound(T max_val) : Bound(static_cast(0), max_val) {} +}; + +namespace detail { +template ::type>::value, detail::enabler> = detail::dummy> +auto smart_deref(T value) -> decltype(*value) { + return *value; +} + +template < + typename T, + enable_if_t::type>::value, detail::enabler> = detail::dummy> +typename std::remove_reference::type &smart_deref(T &value) { + return value; +} +/// Generate a string representation of a set +template std::string generate_set(const T &set) { + using element_t = typename detail::element_type::type; + using iteration_type_t = typename detail::pair_adaptor::value_type; // the type of the object pair + std::string out(1, '{'); + out.append(detail::join( + detail::smart_deref(set), + [](const iteration_type_t &v) { return detail::pair_adaptor::first(v); }, + ",")); + out.push_back('}'); + return out; +} + +/// Generate a string representation of a map +template std::string generate_map(const T &map, bool key_only = false) { + using element_t = typename detail::element_type::type; + using iteration_type_t = typename detail::pair_adaptor::value_type; // the type of the object pair + std::string out(1, '{'); + out.append(detail::join( + detail::smart_deref(map), + [key_only](const iteration_type_t &v) { + std::string res{detail::to_string(detail::pair_adaptor::first(v))}; + + if(!key_only) { + res.append("->"); + res += detail::to_string(detail::pair_adaptor::second(v)); + } + return res; + }, + ",")); + out.push_back('}'); + return out; +} + +template struct has_find { + template + static auto test(int) -> decltype(std::declval().find(std::declval()), std::true_type()); + template static auto test(...) -> decltype(std::false_type()); + + static const auto value = decltype(test(0))::value; + using type = std::integral_constant; +}; + +/// A search function +template ::value, detail::enabler> = detail::dummy> +auto search(const T &set, const V &val) -> std::pair { + using element_t = typename detail::element_type::type; + auto &setref = detail::smart_deref(set); + auto it = std::find_if(std::begin(setref), std::end(setref), [&val](decltype(*std::begin(setref)) v) { + return (detail::pair_adaptor::first(v) == val); + }); + return {(it != std::end(setref)), it}; +} + +/// A search function that uses the built in find function +template ::value, detail::enabler> = detail::dummy> +auto search(const T &set, const V &val) -> std::pair { + auto &setref = detail::smart_deref(set); + auto it = setref.find(val); + return {(it != std::end(setref)), it}; +} + +/// A search function with a filter function +template +auto search(const T &set, const V &val, const std::function &filter_function) + -> std::pair { + using element_t = typename detail::element_type::type; + // do the potentially faster first search + auto res = search(set, val); + if((res.first) || (!(filter_function))) { + return res; + } + // if we haven't found it do the longer linear search with all the element translations + auto &setref = detail::smart_deref(set); + auto it = std::find_if(std::begin(setref), std::end(setref), [&](decltype(*std::begin(setref)) v) { + V a{detail::pair_adaptor::first(v)}; + a = filter_function(a); + return (a == val); + }); + return {(it != std::end(setref)), it}; +} + +// the following suggestion was made by Nikita Ofitserov(@himikof) +// done in templates to prevent compiler warnings on negation of unsigned numbers + +/// Do a check for overflow on signed numbers +template +inline typename std::enable_if::value, T>::type overflowCheck(const T &a, const T &b) { + if((a > 0) == (b > 0)) { + return ((std::numeric_limits::max)() / (std::abs)(a) < (std::abs)(b)); + } + return ((std::numeric_limits::min)() / (std::abs)(a) > -(std::abs)(b)); +} +/// Do a check for overflow on unsigned numbers +template +inline typename std::enable_if::value, T>::type overflowCheck(const T &a, const T &b) { + return ((std::numeric_limits::max)() / a < b); +} + +/// Performs a *= b; if it doesn't cause integer overflow. Returns false otherwise. +template typename std::enable_if::value, bool>::type checked_multiply(T &a, T b) { + if(a == 0 || b == 0 || a == 1 || b == 1) { + a *= b; + return true; + } + if(a == (std::numeric_limits::min)() || b == (std::numeric_limits::min)()) { + return false; + } + if(overflowCheck(a, b)) { + return false; + } + a *= b; + return true; +} + +/// Performs a *= b; if it doesn't equal infinity. Returns false otherwise. +template +typename std::enable_if::value, bool>::type checked_multiply(T &a, T b) { + T c = a * b; + if(std::isinf(c) && !std::isinf(a) && !std::isinf(b)) { + return false; + } + a = c; + return true; +} + +} // namespace detail +/// Verify items are in a set +class IsMember : public Validator { + public: + using filter_fn_t = std::function; + + /// This allows in-place construction using an initializer list + template + IsMember(std::initializer_list values, Args &&...args) + : IsMember(std::vector(values), std::forward(args)...) {} + + /// This checks to see if an item is in a set (empty function) + template explicit IsMember(T &&set) : IsMember(std::forward(set), nullptr) {} + + /// This checks to see if an item is in a set: pointer or copy version. You can pass in a function that will filter + /// both sides of the comparison before computing the comparison. + template explicit IsMember(T set, F filter_function) { + + // Get the type of the contained item - requires a container have ::value_type + // if the type does not have first_type and second_type, these are both value_type + using element_t = typename detail::element_type::type; // Removes (smart) pointers if needed + using item_t = typename detail::pair_adaptor::first_type; // Is value_type if not a map + + using local_item_t = typename IsMemberType::type; // This will convert bad types to good ones + // (const char * to std::string) + + // Make a local copy of the filter function, using a std::function if not one already + std::function filter_fn = filter_function; + + // This is the type name for help, it will take the current version of the set contents + desc_function_ = [set]() { return detail::generate_set(detail::smart_deref(set)); }; + + // This is the function that validates + // It stores a copy of the set pointer-like, so shared_ptr will stay alive + func_ = [set, filter_fn](std::string &input) { + using CLI::detail::lexical_cast; + local_item_t b; + if(!lexical_cast(input, b)) { + throw ValidationError(input); // name is added later + } + if(filter_fn) { + b = filter_fn(b); + } + auto res = detail::search(set, b, filter_fn); + if(res.first) { + // Make sure the version in the input string is identical to the one in the set + if(filter_fn) { + input = detail::value_string(detail::pair_adaptor::first(*(res.second))); + } + + // Return empty error string (success) + return std::string{}; + } + + // If you reach this point, the result was not found + return input + " not in " + detail::generate_set(detail::smart_deref(set)); + }; + } + + /// You can pass in as many filter functions as you like, they nest (string only currently) + template + IsMember(T &&set, filter_fn_t filter_fn_1, filter_fn_t filter_fn_2, Args &&...other) + : IsMember( + std::forward(set), + [filter_fn_1, filter_fn_2](std::string a) { return filter_fn_2(filter_fn_1(a)); }, + other...) {} +}; + +/// definition of the default transformation object +template using TransformPairs = std::vector>; + +/// Translate named items to other or a value set +class Transformer : public Validator { + public: + using filter_fn_t = std::function; + + /// This allows in-place construction + template + Transformer(std::initializer_list> values, Args &&...args) + : Transformer(TransformPairs(values), std::forward(args)...) {} + + /// direct map of std::string to std::string + template explicit Transformer(T &&mapping) : Transformer(std::forward(mapping), nullptr) {} + + /// This checks to see if an item is in a set: pointer or copy version. You can pass in a function that will filter + /// both sides of the comparison before computing the comparison. + template explicit Transformer(T mapping, F filter_function) { + + static_assert(detail::pair_adaptor::type>::value, + "mapping must produce value pairs"); + // Get the type of the contained item - requires a container have ::value_type + // if the type does not have first_type and second_type, these are both value_type + using element_t = typename detail::element_type::type; // Removes (smart) pointers if needed + using item_t = typename detail::pair_adaptor::first_type; // Is value_type if not a map + using local_item_t = typename IsMemberType::type; // Will convert bad types to good ones + // (const char * to std::string) + + // Make a local copy of the filter function, using a std::function if not one already + std::function filter_fn = filter_function; + + // This is the type name for help, it will take the current version of the set contents + desc_function_ = [mapping]() { return detail::generate_map(detail::smart_deref(mapping)); }; + + func_ = [mapping, filter_fn](std::string &input) { + using CLI::detail::lexical_cast; + local_item_t b; + if(!lexical_cast(input, b)) { + return std::string(); + // there is no possible way we can match anything in the mapping if we can't convert so just return + } + if(filter_fn) { + b = filter_fn(b); + } + auto res = detail::search(mapping, b, filter_fn); + if(res.first) { + input = detail::value_string(detail::pair_adaptor::second(*res.second)); + } + return std::string{}; + }; + } + + /// You can pass in as many filter functions as you like, they nest + template + Transformer(T &&mapping, filter_fn_t filter_fn_1, filter_fn_t filter_fn_2, Args &&...other) + : Transformer( + std::forward(mapping), + [filter_fn_1, filter_fn_2](std::string a) { return filter_fn_2(filter_fn_1(a)); }, + other...) {} +}; + +/// translate named items to other or a value set +class CheckedTransformer : public Validator { + public: + using filter_fn_t = std::function; + + /// This allows in-place construction + template + CheckedTransformer(std::initializer_list> values, Args &&...args) + : CheckedTransformer(TransformPairs(values), std::forward(args)...) {} + + /// direct map of std::string to std::string + template explicit CheckedTransformer(T mapping) : CheckedTransformer(std::move(mapping), nullptr) {} + + /// This checks to see if an item is in a set: pointer or copy version. You can pass in a function that will filter + /// both sides of the comparison before computing the comparison. + template explicit CheckedTransformer(T mapping, F filter_function) { + + static_assert(detail::pair_adaptor::type>::value, + "mapping must produce value pairs"); + // Get the type of the contained item - requires a container have ::value_type + // if the type does not have first_type and second_type, these are both value_type + using element_t = typename detail::element_type::type; // Removes (smart) pointers if needed + using item_t = typename detail::pair_adaptor::first_type; // Is value_type if not a map + using local_item_t = typename IsMemberType::type; // Will convert bad types to good ones + // (const char * to std::string) + using iteration_type_t = typename detail::pair_adaptor::value_type; // the type of the object pair + + // Make a local copy of the filter function, using a std::function if not one already + std::function filter_fn = filter_function; + + auto tfunc = [mapping]() { + std::string out("value in "); + out += detail::generate_map(detail::smart_deref(mapping)) + " OR {"; + out += detail::join( + detail::smart_deref(mapping), + [](const iteration_type_t &v) { return detail::to_string(detail::pair_adaptor::second(v)); }, + ","); + out.push_back('}'); + return out; + }; + + desc_function_ = tfunc; + + func_ = [mapping, tfunc, filter_fn](std::string &input) { + using CLI::detail::lexical_cast; + local_item_t b; + bool converted = lexical_cast(input, b); + if(converted) { + if(filter_fn) { + b = filter_fn(b); + } + auto res = detail::search(mapping, b, filter_fn); + if(res.first) { + input = detail::value_string(detail::pair_adaptor::second(*res.second)); + return std::string{}; + } + } + for(const auto &v : detail::smart_deref(mapping)) { + auto output_string = detail::value_string(detail::pair_adaptor::second(v)); + if(output_string == input) { + return std::string(); + } + } + + return "Check " + input + " " + tfunc() + " FAILED"; + }; + } + + /// You can pass in as many filter functions as you like, they nest + template + CheckedTransformer(T &&mapping, filter_fn_t filter_fn_1, filter_fn_t filter_fn_2, Args &&...other) + : CheckedTransformer( + std::forward(mapping), + [filter_fn_1, filter_fn_2](std::string a) { return filter_fn_2(filter_fn_1(a)); }, + other...) {} +}; + +/// Helper function to allow ignore_case to be passed to IsMember or Transform +inline std::string ignore_case(std::string item) { return detail::to_lower(item); } + +/// Helper function to allow ignore_underscore to be passed to IsMember or Transform +inline std::string ignore_underscore(std::string item) { return detail::remove_underscore(item); } + +/// Helper function to allow checks to ignore spaces to be passed to IsMember or Transform +inline std::string ignore_space(std::string item) { + item.erase(std::remove(std::begin(item), std::end(item), ' '), std::end(item)); + item.erase(std::remove(std::begin(item), std::end(item), '\t'), std::end(item)); + return item; +} + +/// Multiply a number by a factor using given mapping. +/// Can be used to write transforms for SIZE or DURATION inputs. +/// +/// Example: +/// With mapping = `{"b"->1, "kb"->1024, "mb"->1024*1024}` +/// one can recognize inputs like "100", "12kb", "100 MB", +/// that will be automatically transformed to 100, 14448, 104857600. +/// +/// Output number type matches the type in the provided mapping. +/// Therefore, if it is required to interpret real inputs like "0.42 s", +/// the mapping should be of a type or . +class AsNumberWithUnit : public Validator { + public: + /// Adjust AsNumberWithUnit behavior. + /// CASE_SENSITIVE/CASE_INSENSITIVE controls how units are matched. + /// UNIT_OPTIONAL/UNIT_REQUIRED throws ValidationError + /// if UNIT_REQUIRED is set and unit literal is not found. + enum Options { + CASE_SENSITIVE = 0, + CASE_INSENSITIVE = 1, + UNIT_OPTIONAL = 0, + UNIT_REQUIRED = 2, + DEFAULT = CASE_INSENSITIVE | UNIT_OPTIONAL + }; + + template + explicit AsNumberWithUnit(std::map mapping, + Options opts = DEFAULT, + const std::string &unit_name = "UNIT") { + description(generate_description(unit_name, opts)); + validate_mapping(mapping, opts); + + // transform function + func_ = [mapping, opts](std::string &input) -> std::string { + Number num{}; + + detail::rtrim(input); + if(input.empty()) { + throw ValidationError("Input is empty"); + } + + // Find split position between number and prefix + auto unit_begin = input.end(); + while(unit_begin > input.begin() && std::isalpha(*(unit_begin - 1), std::locale())) { + --unit_begin; + } + + std::string unit{unit_begin, input.end()}; + input.resize(static_cast(std::distance(input.begin(), unit_begin))); + detail::trim(input); + + if(opts & UNIT_REQUIRED && unit.empty()) { + throw ValidationError("Missing mandatory unit"); + } + if(opts & CASE_INSENSITIVE) { + unit = detail::to_lower(unit); + } + if(unit.empty()) { + using CLI::detail::lexical_cast; + if(!lexical_cast(input, num)) { + throw ValidationError(std::string("Value ") + input + " could not be converted to " + + detail::type_name()); + } + // No need to modify input if no unit passed + return {}; + } + + // find corresponding factor + auto it = mapping.find(unit); + if(it == mapping.end()) { + throw ValidationError(unit + + " unit not recognized. " + "Allowed values: " + + detail::generate_map(mapping, true)); + } + + if(!input.empty()) { + using CLI::detail::lexical_cast; + bool converted = lexical_cast(input, num); + if(!converted) { + throw ValidationError(std::string("Value ") + input + " could not be converted to " + + detail::type_name()); + } + // perform safe multiplication + bool ok = detail::checked_multiply(num, it->second); + if(!ok) { + throw ValidationError(detail::to_string(num) + " multiplied by " + unit + + " factor would cause number overflow. Use smaller value."); + } + } else { + num = static_cast(it->second); + } + + input = detail::to_string(num); + + return {}; + }; + } + + private: + /// Check that mapping contains valid units. + /// Update mapping for CASE_INSENSITIVE mode. + template static void validate_mapping(std::map &mapping, Options opts) { + for(auto &kv : mapping) { + if(kv.first.empty()) { + throw ValidationError("Unit must not be empty."); + } + if(!detail::isalpha(kv.first)) { + throw ValidationError("Unit must contain only letters."); + } + } + + // make all units lowercase if CASE_INSENSITIVE + if(opts & CASE_INSENSITIVE) { + std::map lower_mapping; + for(auto &kv : mapping) { + auto s = detail::to_lower(kv.first); + if(lower_mapping.count(s)) { + throw ValidationError(std::string("Several matching lowercase unit representations are found: ") + + s); + } + lower_mapping[detail::to_lower(kv.first)] = kv.second; + } + mapping = std::move(lower_mapping); + } + } + + /// Generate description like this: NUMBER [UNIT] + template static std::string generate_description(const std::string &name, Options opts) { + std::stringstream out; + out << detail::type_name() << ' '; + if(opts & UNIT_REQUIRED) { + out << name; + } else { + out << '[' << name << ']'; + } + return out.str(); + } +}; + +inline AsNumberWithUnit::Options operator|(const AsNumberWithUnit::Options &a, const AsNumberWithUnit::Options &b) { + return static_cast(static_cast(a) | static_cast(b)); +} + +/// Converts a human-readable size string (with unit literal) to uin64_t size. +/// Example: +/// "100" => 100 +/// "1 b" => 100 +/// "10Kb" => 10240 // you can configure this to be interpreted as kilobyte (*1000) or kibibyte (*1024) +/// "10 KB" => 10240 +/// "10 kb" => 10240 +/// "10 kib" => 10240 // *i, *ib are always interpreted as *bibyte (*1024) +/// "10kb" => 10240 +/// "2 MB" => 2097152 +/// "2 EiB" => 2^61 // Units up to exibyte are supported +class AsSizeValue : public AsNumberWithUnit { + public: + using result_t = std::uint64_t; + + /// If kb_is_1000 is true, + /// interpret 'kb', 'k' as 1000 and 'kib', 'ki' as 1024 + /// (same applies to higher order units as well). + /// Otherwise, interpret all literals as factors of 1024. + /// The first option is formally correct, but + /// the second interpretation is more wide-spread + /// (see https://en.wikipedia.org/wiki/Binary_prefix). + explicit AsSizeValue(bool kb_is_1000); + + private: + /// Get mapping + static std::map init_mapping(bool kb_is_1000); + + /// Cache calculated mapping + static std::map get_mapping(bool kb_is_1000); +}; + +namespace detail { +/// Split a string into a program name and command line arguments +/// the string is assumed to contain a file name followed by other arguments +/// the return value contains is a pair with the first argument containing the program name and the second +/// everything else. +CLI11_INLINE std::pair split_program_name(std::string commandline); + +} // namespace detail +/// @} + + + + +CLI11_INLINE std::string Validator::operator()(std::string &str) const { + std::string retstring; + if(active_) { + if(non_modifying_) { + std::string value = str; + retstring = func_(value); + } else { + retstring = func_(str); + } + } + return retstring; +} + +CLI11_NODISCARD CLI11_INLINE Validator Validator::description(std::string validator_desc) const { + Validator newval(*this); + newval.desc_function_ = [validator_desc]() { return validator_desc; }; + return newval; +} + +CLI11_INLINE Validator Validator::operator&(const Validator &other) const { + Validator newval; + + newval._merge_description(*this, other, " AND "); + + // Give references (will make a copy in lambda function) + const std::function &f1 = func_; + const std::function &f2 = other.func_; + + newval.func_ = [f1, f2](std::string &input) { + std::string s1 = f1(input); + std::string s2 = f2(input); + if(!s1.empty() && !s2.empty()) + return std::string("(") + s1 + ") AND (" + s2 + ")"; + return s1 + s2; + }; + + newval.active_ = active_ && other.active_; + newval.application_index_ = application_index_; + return newval; +} + +CLI11_INLINE Validator Validator::operator|(const Validator &other) const { + Validator newval; + + newval._merge_description(*this, other, " OR "); + + // Give references (will make a copy in lambda function) + const std::function &f1 = func_; + const std::function &f2 = other.func_; + + newval.func_ = [f1, f2](std::string &input) { + std::string s1 = f1(input); + std::string s2 = f2(input); + if(s1.empty() || s2.empty()) + return std::string(); + + return std::string("(") + s1 + ") OR (" + s2 + ")"; + }; + newval.active_ = active_ && other.active_; + newval.application_index_ = application_index_; + return newval; +} + +CLI11_INLINE Validator Validator::operator!() const { + Validator newval; + const std::function &dfunc1 = desc_function_; + newval.desc_function_ = [dfunc1]() { + auto str = dfunc1(); + return (!str.empty()) ? std::string("NOT ") + str : std::string{}; + }; + // Give references (will make a copy in lambda function) + const std::function &f1 = func_; + + newval.func_ = [f1, dfunc1](std::string &test) -> std::string { + std::string s1 = f1(test); + if(s1.empty()) { + return std::string("check ") + dfunc1() + " succeeded improperly"; + } + return std::string{}; + }; + newval.active_ = active_; + newval.application_index_ = application_index_; + return newval; +} + +CLI11_INLINE void +Validator::_merge_description(const Validator &val1, const Validator &val2, const std::string &merger) { + + const std::function &dfunc1 = val1.desc_function_; + const std::function &dfunc2 = val2.desc_function_; + + desc_function_ = [=]() { + std::string f1 = dfunc1(); + std::string f2 = dfunc2(); + if((f1.empty()) || (f2.empty())) { + return f1 + f2; + } + return std::string(1, '(') + f1 + ')' + merger + '(' + f2 + ')'; + }; +} + +namespace detail { + +#if defined CLI11_HAS_FILESYSTEM && CLI11_HAS_FILESYSTEM > 0 +CLI11_INLINE path_type check_path(const char *file) noexcept { + std::error_code ec; + auto stat = std::filesystem::status(to_path(file), ec); + if(ec) { + return path_type::nonexistent; + } + switch(stat.type()) { + case std::filesystem::file_type::none: // LCOV_EXCL_LINE + case std::filesystem::file_type::not_found: + return path_type::nonexistent; // LCOV_EXCL_LINE + case std::filesystem::file_type::directory: + return path_type::directory; + case std::filesystem::file_type::symlink: + case std::filesystem::file_type::block: + case std::filesystem::file_type::character: + case std::filesystem::file_type::fifo: + case std::filesystem::file_type::socket: + case std::filesystem::file_type::regular: + case std::filesystem::file_type::unknown: + default: + return path_type::file; + } +} +#else +CLI11_INLINE path_type check_path(const char *file) noexcept { +#if defined(_MSC_VER) + struct __stat64 buffer; + if(_stat64(file, &buffer) == 0) { + return ((buffer.st_mode & S_IFDIR) != 0) ? path_type::directory : path_type::file; + } +#else + struct stat buffer; + if(stat(file, &buffer) == 0) { + return ((buffer.st_mode & S_IFDIR) != 0) ? path_type::directory : path_type::file; + } +#endif + return path_type::nonexistent; +} +#endif + +CLI11_INLINE ExistingFileValidator::ExistingFileValidator() : Validator("FILE") { + func_ = [](std::string &filename) { + auto path_result = check_path(filename.c_str()); + if(path_result == path_type::nonexistent) { + return "File does not exist: " + filename; + } + if(path_result == path_type::directory) { + return "File is actually a directory: " + filename; + } + return std::string(); + }; +} + +CLI11_INLINE ExistingDirectoryValidator::ExistingDirectoryValidator() : Validator("DIR") { + func_ = [](std::string &filename) { + auto path_result = check_path(filename.c_str()); + if(path_result == path_type::nonexistent) { + return "Directory does not exist: " + filename; + } + if(path_result == path_type::file) { + return "Directory is actually a file: " + filename; + } + return std::string(); + }; +} + +CLI11_INLINE ExistingPathValidator::ExistingPathValidator() : Validator("PATH(existing)") { + func_ = [](std::string &filename) { + auto path_result = check_path(filename.c_str()); + if(path_result == path_type::nonexistent) { + return "Path does not exist: " + filename; + } + return std::string(); + }; +} + +CLI11_INLINE NonexistentPathValidator::NonexistentPathValidator() : Validator("PATH(non-existing)") { + func_ = [](std::string &filename) { + auto path_result = check_path(filename.c_str()); + if(path_result != path_type::nonexistent) { + return "Path already exists: " + filename; + } + return std::string(); + }; +} + +CLI11_INLINE IPV4Validator::IPV4Validator() : Validator("IPV4") { + func_ = [](std::string &ip_addr) { + auto result = CLI::detail::split(ip_addr, '.'); + if(result.size() != 4) { + return std::string("Invalid IPV4 address must have four parts (") + ip_addr + ')'; + } + int num = 0; + for(const auto &var : result) { + using CLI::detail::lexical_cast; + bool retval = lexical_cast(var, num); + if(!retval) { + return std::string("Failed parsing number (") + var + ')'; + } + if(num < 0 || num > 255) { + return std::string("Each IP number must be between 0 and 255 ") + var; + } + } + return std::string{}; + }; +} + +CLI11_INLINE EscapedStringTransformer::EscapedStringTransformer() { + func_ = [](std::string &str) { + try { + if(str.size() > 1 && (str.front() == '\"' || str.front() == '\'' || str.front() == '`') && + str.front() == str.back()) { + process_quoted_string(str); + } else if(str.find_first_of('\\') != std::string::npos) { + if(detail::is_binary_escaped_string(str)) { + str = detail::extract_binary_string(str); + } else { + str = remove_escaped_characters(str); + } + } + return std::string{}; + } catch(const std::invalid_argument &ia) { + return std::string(ia.what()); + } + }; +} +} // namespace detail + +CLI11_INLINE FileOnDefaultPath::FileOnDefaultPath(std::string default_path, bool enableErrorReturn) + : Validator("FILE") { + func_ = [default_path, enableErrorReturn](std::string &filename) { + auto path_result = detail::check_path(filename.c_str()); + if(path_result == detail::path_type::nonexistent) { + std::string test_file_path = default_path; + if(default_path.back() != '/' && default_path.back() != '\\') { + // Add folder separator + test_file_path += '/'; + } + test_file_path.append(filename); + path_result = detail::check_path(test_file_path.c_str()); + if(path_result == detail::path_type::file) { + filename = test_file_path; + } else { + if(enableErrorReturn) { + return "File does not exist: " + filename; + } + } + } + return std::string{}; + }; +} + +CLI11_INLINE AsSizeValue::AsSizeValue(bool kb_is_1000) : AsNumberWithUnit(get_mapping(kb_is_1000)) { + if(kb_is_1000) { + description("SIZE [b, kb(=1000b), kib(=1024b), ...]"); + } else { + description("SIZE [b, kb(=1024b), ...]"); + } +} + +CLI11_INLINE std::map AsSizeValue::init_mapping(bool kb_is_1000) { + std::map m; + result_t k_factor = kb_is_1000 ? 1000 : 1024; + result_t ki_factor = 1024; + result_t k = 1; + result_t ki = 1; + m["b"] = 1; + for(std::string p : {"k", "m", "g", "t", "p", "e"}) { + k *= k_factor; + ki *= ki_factor; + m[p] = k; + m[p + "b"] = k; + m[p + "i"] = ki; + m[p + "ib"] = ki; + } + return m; +} + +CLI11_INLINE std::map AsSizeValue::get_mapping(bool kb_is_1000) { + if(kb_is_1000) { + static auto m = init_mapping(true); + return m; + } + static auto m = init_mapping(false); + return m; +} + +namespace detail { + +CLI11_INLINE std::pair split_program_name(std::string commandline) { + // try to determine the programName + std::pair vals; + trim(commandline); + auto esp = commandline.find_first_of(' ', 1); + while(detail::check_path(commandline.substr(0, esp).c_str()) != path_type::file) { + esp = commandline.find_first_of(' ', esp + 1); + if(esp == std::string::npos) { + // if we have reached the end and haven't found a valid file just assume the first argument is the + // program name + if(commandline[0] == '"' || commandline[0] == '\'' || commandline[0] == '`') { + bool embeddedQuote = false; + auto keyChar = commandline[0]; + auto end = commandline.find_first_of(keyChar, 1); + while((end != std::string::npos) && (commandline[end - 1] == '\\')) { // deal with escaped quotes + end = commandline.find_first_of(keyChar, end + 1); + embeddedQuote = true; + } + if(end != std::string::npos) { + vals.first = commandline.substr(1, end - 1); + esp = end + 1; + if(embeddedQuote) { + vals.first = find_and_replace(vals.first, std::string("\\") + keyChar, std::string(1, keyChar)); + } + } else { + esp = commandline.find_first_of(' ', 1); + } + } else { + esp = commandline.find_first_of(' ', 1); + } + + break; + } + } + if(vals.first.empty()) { + vals.first = commandline.substr(0, esp); + rtrim(vals.first); + } + + // strip the program name + vals.second = (esp < commandline.length() - 1) ? commandline.substr(esp + 1) : std::string{}; + ltrim(vals.second); + return vals; +} + +} // namespace detail +/// @} + + + + +class Option; +class App; + +/// This enum signifies the type of help requested +/// +/// This is passed in by App; all user classes must accept this as +/// the second argument. + +enum class AppFormatMode { + Normal, ///< The normal, detailed help + All, ///< A fully expanded help + Sub, ///< Used when printed as part of expanded subcommand +}; + +/// This is the minimum requirements to run a formatter. +/// +/// A user can subclass this is if they do not care at all +/// about the structure in CLI::Formatter. +class FormatterBase { + protected: + /// @name Options + ///@{ + + /// The width of the first column + std::size_t column_width_{30}; + + /// @brief The required help printout labels (user changeable) + /// Values are Needs, Excludes, etc. + std::map labels_{}; + + ///@} + /// @name Basic + ///@{ + + public: + FormatterBase() = default; + FormatterBase(const FormatterBase &) = default; + FormatterBase(FormatterBase &&) = default; + FormatterBase &operator=(const FormatterBase &) = default; + FormatterBase &operator=(FormatterBase &&) = default; + + /// Adding a destructor in this form to work around bug in GCC 4.7 + virtual ~FormatterBase() noexcept {} // NOLINT(modernize-use-equals-default) + + /// This is the key method that puts together help + virtual std::string make_help(const App *, std::string, AppFormatMode) const = 0; + + ///@} + /// @name Setters + ///@{ + + /// Set the "REQUIRED" label + void label(std::string key, std::string val) { labels_[key] = val; } + + /// Set the column width + void column_width(std::size_t val) { column_width_ = val; } + + ///@} + /// @name Getters + ///@{ + + /// Get the current value of a name (REQUIRED, etc.) + CLI11_NODISCARD std::string get_label(std::string key) const { + if(labels_.find(key) == labels_.end()) + return key; + return labels_.at(key); + } + + /// Get the current column width + CLI11_NODISCARD std::size_t get_column_width() const { return column_width_; } + + ///@} +}; + +/// This is a specialty override for lambda functions +class FormatterLambda final : public FormatterBase { + using funct_t = std::function; + + /// The lambda to hold and run + funct_t lambda_; + + public: + /// Create a FormatterLambda with a lambda function + explicit FormatterLambda(funct_t funct) : lambda_(std::move(funct)) {} + + /// Adding a destructor (mostly to make GCC 4.7 happy) + ~FormatterLambda() noexcept override {} // NOLINT(modernize-use-equals-default) + + /// This will simply call the lambda function + std::string make_help(const App *app, std::string name, AppFormatMode mode) const override { + return lambda_(app, name, mode); + } +}; + +/// This is the default Formatter for CLI11. It pretty prints help output, and is broken into quite a few +/// overridable methods, to be highly customizable with minimal effort. +class Formatter : public FormatterBase { + public: + Formatter() = default; + Formatter(const Formatter &) = default; + Formatter(Formatter &&) = default; + Formatter &operator=(const Formatter &) = default; + Formatter &operator=(Formatter &&) = default; + + /// @name Overridables + ///@{ + + /// This prints out a group of options with title + /// + CLI11_NODISCARD virtual std::string + make_group(std::string group, bool is_positional, std::vector opts) const; + + /// This prints out just the positionals "group" + virtual std::string make_positionals(const App *app) const; + + /// This prints out all the groups of options + std::string make_groups(const App *app, AppFormatMode mode) const; + + /// This prints out all the subcommands + virtual std::string make_subcommands(const App *app, AppFormatMode mode) const; + + /// This prints out a subcommand + virtual std::string make_subcommand(const App *sub) const; + + /// This prints out a subcommand in help-all + virtual std::string make_expanded(const App *sub) const; + + /// This prints out all the groups of options + virtual std::string make_footer(const App *app) const; + + /// This displays the description line + virtual std::string make_description(const App *app) const; + + /// This displays the usage line + virtual std::string make_usage(const App *app, std::string name) const; + + /// This puts everything together + std::string make_help(const App * /*app*/, std::string, AppFormatMode) const override; + + ///@} + /// @name Options + ///@{ + + /// This prints out an option help line, either positional or optional form + virtual std::string make_option(const Option *opt, bool is_positional) const { + std::stringstream out; + detail::format_help( + out, make_option_name(opt, is_positional) + make_option_opts(opt), make_option_desc(opt), column_width_); + return out.str(); + } + + /// @brief This is the name part of an option, Default: left column + virtual std::string make_option_name(const Option *, bool) const; + + /// @brief This is the options part of the name, Default: combined into left column + virtual std::string make_option_opts(const Option *) const; + + /// @brief This is the description. Default: Right column, on new line if left column too large + virtual std::string make_option_desc(const Option *) const; + + /// @brief This is used to print the name on the USAGE line + virtual std::string make_option_usage(const Option *opt) const; + + ///@} +}; + + + + +using results_t = std::vector; +/// callback function definition +using callback_t = std::function; + +class Option; +class App; + +using Option_p = std::unique_ptr