From f2be2f97a21fd4766dae5b352c0e90da451dcb92 Mon Sep 17 00:00:00 2001 From: Andrew D Smith Date: Thu, 20 Nov 2025 14:43:11 -0800 Subject: [PATCH 1/2] updating submodules --- src/bamxx | 2 +- src/smithlab_cpp | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/src/bamxx b/src/bamxx index 2117a60e..3fb04562 160000 --- a/src/bamxx +++ b/src/bamxx @@ -1 +1 @@ -Subproject commit 2117a60e9813ca696ea604197857e8a7ae3850c7 +Subproject commit 3fb045628a7c4d23dd7fec99a11a5b9f41ce51c6 diff --git a/src/smithlab_cpp b/src/smithlab_cpp index 28c5d489..b64428f6 160000 --- a/src/smithlab_cpp +++ b/src/smithlab_cpp @@ -1 +1 @@ -Subproject commit 28c5d4895278de11319a4dc5fada912d21ab9f78 +Subproject commit b64428f65937b15ade6e9188a7ff1304de91bec3 From 4a18f1df7399bcb2166696b4bd4ef802c9529f87 Mon Sep 17 00:00:00 2001 From: Andrew D Smith Date: Thu, 20 Nov 2025 14:43:42 -0800 Subject: [PATCH 2/2] src/analysis/nanopore.cpp: fixing denom for nanopore probability representation --- src/analysis/nanopore.cpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/analysis/nanopore.cpp b/src/analysis/nanopore.cpp index 55372f01..7d41ff07 100644 --- a/src/analysis/nanopore.cpp +++ b/src/analysis/nanopore.cpp @@ -171,7 +171,7 @@ is_c_at_g(const std::string &s, const std::size_t i) { requirement of the program into a more reasonable range, so keeping all the information seems reasonable. */ struct CountSet { - static constexpr auto max_prob_repr = 256.0; + static constexpr auto max_prob_repr = 255.0; [[nodiscard]] std::string tostring() const { // clang-format off