DNMTools release (macOS) #7
Workflow file for this run
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| name: DNMTools release (macOS) | |
| on: | |
| workflow_dispatch: | |
| jobs: | |
| build-macos-binaries: | |
| strategy: | |
| matrix: | |
| os: [macos-13, macos-14] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Make dnmtools dependency directories | |
| run: sudo mkdir -p /opt/dnmtools/lib /opt/dnmtools/include | |
| - name: Install dependency headers and static libs | |
| run: | | |
| brew install zlib gsl automake | |
| sudo cp $(brew --prefix zlib)/lib/*.a /opt/dnmtools/lib | |
| sudo cp $(brew --prefix gsl)/lib/*.a /opt/dnmtools/lib | |
| sudo cp -r $(brew --prefix zlib)/include/* /opt/dnmtools/include | |
| sudo cp -r $(brew --prefix gsl)/include/* /opt/dnmtools/include | |
| - name: Build and install libdeflate | |
| run: | | |
| git clone https://github.com/ebiggers/libdeflate.git && \ | |
| cd libdeflate && \ | |
| cmake -B build \ | |
| -DLIBDEFLATE_BUILD_GZIP=off \ | |
| -DLIBDEFLATE_BUILD_TESTS=off \ | |
| -DLIBDEFLATE_BUILD_SHARED_LIB=off \ | |
| -DCMAKE_VERBOSE_MAKEFILE=on \ | |
| -DCMAKE_BUILD_TYPE=Release && \ | |
| cmake --build build -j4 && \ | |
| sudo cmake --install build --prefix=/opt/dnmtools | |
| - name: Build and install HTSlib | |
| run: | | |
| git clone --recursive https://github.com/samtools/htslib.git | |
| cd htslib | |
| sudo cp -r htslib /opt/dnmtools/include | |
| autoreconf -i | |
| mkdir build && cd build | |
| ../configure \ | |
| --disable-bz2 \ | |
| --disable-libcurl \ | |
| --disable-lzma \ | |
| --disable-ref-cache \ | |
| --with-libdeflate \ | |
| LDFLAGS="-L/opt/dnmtools/lib" CPPFLAGS="-I/opt/dnmtools/include" | |
| make -j4 CFLAGS="-Wall -O2 -fvisibility=hidden" libhts.a | |
| sudo cp libhts.a /opt/dnmtools/lib | |
| - name: Build dnmtools | |
| run: | | |
| ./autogen.sh | |
| mkdir build && cd build | |
| ../configure --with-libdeflate \ | |
| CXX=g++-14 \ | |
| LDFLAGS="-L/opt/dnmtools/lib -static-libgcc -static-libstdc++ -Wl,-dead_strip" \ | |
| CPPFLAGS="-I/opt/dnmtools/include" | |
| make -j4 | |
| - name: Rename the binary | |
| run: mv build/dnmtools dnmtools_$(uname -m) | |
| - name: Get version number | |
| id: vars | |
| run: | | |
| awk '/AC_INIT/ {print "vn="$2}' configure.ac | \ | |
| sed "s/\[//; s/\]//; s/,//" >> "$GITHUB_OUTPUT" | |
| uname -m | awk '{print "arch="$0}' >> "$GITHUB_OUTPUT" | |
| env: | |
| GH_TOKEN: ${{ github.token }} | |
| - name: Upload the binary | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: dnmtools-${{ steps.vars.outputs.arch }} | |
| path: | | |
| dnmtools_${{ steps.vars.outputs.arch }} | |
| make-lipo: | |
| needs: build-macos-binaries | |
| runs-on: macos-15 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: binaries | |
| pattern: dnmtools-* | |
| merge-multiple: false | |
| - name: Create universal binary | |
| run: | | |
| lipo -create \ | |
| binaries/dnmtools-*/dnmtools_* \ | |
| -output dnmtools | |
| chmod +x dnmtools | |
| - name: Get version number | |
| id: vn | |
| run: awk '/AC_INIT/ {print "vn="$2}' configure.ac | sed "s/\[//; s/\]//; s/,//" >> "$GITHUB_OUTPUT" | |
| env: | |
| GH_TOKEN: ${{ github.token }} | |
| - name: Upload the lipo binary | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: dnmtools-${{ steps.vn.outputs.vn }}-macOS | |
| path: dnmtools |