From 1404a4d1d03a4272f77e6cf8245b18dbf61ed970 Mon Sep 17 00:00:00 2001 From: Matt Cieslak Date: Tue, 10 Aug 2021 17:21:21 -0400 Subject: [PATCH 1/2] install hdf5 dependencies in rocker image --- .circleci/config.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.circleci/config.yml b/.circleci/config.yml index a441e01..34a2c32 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -6,6 +6,9 @@ steps: &steps keys: - cache-{{ .Environment.CIRCLE_JOB }} - checkout + - run: + name: Install libraries + command: apt-get install -y --no-install-recommends libhdf5-dev - run: name: Install package dependencies command: R -e "devtools::install_deps(dep = TRUE)" From f75967dee103777768a610f2017af592f3f76139 Mon Sep 17 00:00:00 2001 From: Matt Cieslak Date: Tue, 10 Aug 2021 17:25:18 -0400 Subject: [PATCH 2/2] apt-get update first --- .circleci/config.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 34a2c32..47f43df 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -8,7 +8,7 @@ steps: &steps - checkout - run: name: Install libraries - command: apt-get install -y --no-install-recommends libhdf5-dev + command: apt-get update && apt-get install -y --no-install-recommends libhdf5-dev - run: name: Install package dependencies command: R -e "devtools::install_deps(dep = TRUE)"