From 8a08c0fec768424bd5a18ccdf6ef4527b68266b6 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 13 Jan 2026 13:22:08 +0000 Subject: [PATCH] Add riboWaltz test data Test data files generated from nf-core/ribowaltz module nf-test runs. Files included: - test.ribowaltz.psite_region.tsv - P-site region distribution - test.ribowaltz.frames.tsv - Reading frame distribution - test.ribowaltz.metaprofile_psite.tsv - Metaprofile around start/stop codons - test.ribowaltz.frames_stratified.tsv - Frames by read length (future use) - test.ribowaltz.codon_usage.tsv - Codon usage data (future use) - test.ribowaltz.length_distribution.tsv - Read length distribution (future use) - test.ribowaltz.length_bins_for_psite.tsv - P-site offset bins (future use) Co-Authored-By: Claude Opus 4.5 --- data/ribowaltz/test.ribowaltz.codon_usage.tsv | 65 ++++++ data/ribowaltz/test.ribowaltz.frames.tsv | 10 + .../test.ribowaltz.frames_stratified.tsv | 199 ++++++++++++++++++ .../test.ribowaltz.length_bins_for_psite.tsv | 45 ++++ .../test.ribowaltz.length_distribution.tsv | 15 ++ .../test.ribowaltz.metaprofile_psite.tsv | 133 ++++++++++++ .../ribowaltz/test.ribowaltz.psite_region.tsv | 7 + 7 files changed, 474 insertions(+) create mode 100644 data/ribowaltz/test.ribowaltz.codon_usage.tsv create mode 100644 data/ribowaltz/test.ribowaltz.frames.tsv create mode 100644 data/ribowaltz/test.ribowaltz.frames_stratified.tsv create mode 100644 data/ribowaltz/test.ribowaltz.length_bins_for_psite.tsv create mode 100644 data/ribowaltz/test.ribowaltz.length_distribution.tsv create mode 100644 data/ribowaltz/test.ribowaltz.metaprofile_psite.tsv create mode 100644 data/ribowaltz/test.ribowaltz.psite_region.tsv diff --git a/data/ribowaltz/test.ribowaltz.codon_usage.tsv b/data/ribowaltz/test.ribowaltz.codon_usage.tsv new file mode 100644 index 00000000..aed991c2 --- /dev/null +++ b/data/ribowaltz/test.ribowaltz.codon_usage.tsv @@ -0,0 +1,65 @@ +sample codon count norm_count scaled_count +test.ribowaltz GCC 0 +test.ribowaltz GCG 0 +test.ribowaltz GCU 0 +test.ribowaltz GCA 0 +test.ribowaltz AGA 0 +test.ribowaltz CGG 0 +test.ribowaltz AGG 0 +test.ribowaltz CGA 0 +test.ribowaltz CGC 0 +test.ribowaltz CGU 0 +test.ribowaltz AAC 0 +test.ribowaltz AAU 0 +test.ribowaltz GAC 0 +test.ribowaltz GAU 0 +test.ribowaltz UGC 0 +test.ribowaltz UGU 0 +test.ribowaltz CAA 0 +test.ribowaltz CAG 0 +test.ribowaltz GAG 0 +test.ribowaltz GAA 0 +test.ribowaltz GGC 0 +test.ribowaltz GGU 0 +test.ribowaltz GGA 0 +test.ribowaltz GGG 0 +test.ribowaltz CAC 0 +test.ribowaltz CAU 0 +test.ribowaltz AUA 0 +test.ribowaltz AUC 0 +test.ribowaltz AUU 0 +test.ribowaltz CUG 0 +test.ribowaltz CUA 0 +test.ribowaltz UUA 0 +test.ribowaltz CUU 0 +test.ribowaltz UUG 0 +test.ribowaltz CUC 0 +test.ribowaltz AAA 0 +test.ribowaltz AAG 0 +test.ribowaltz AUG 0 +test.ribowaltz UUC 0 +test.ribowaltz UUU 0 +test.ribowaltz CCG 0 +test.ribowaltz CCC 0 +test.ribowaltz CCU 0 +test.ribowaltz CCA 0 +test.ribowaltz AGC 0 +test.ribowaltz UCG 0 +test.ribowaltz UCU 0 +test.ribowaltz UCA 0 +test.ribowaltz UCC 0 +test.ribowaltz AGU 0 +test.ribowaltz UAG 0 +test.ribowaltz UAA 0 +test.ribowaltz UGA 0 +test.ribowaltz ACA 0 +test.ribowaltz ACC 0 +test.ribowaltz ACG 0 +test.ribowaltz ACU 0 +test.ribowaltz UGG 0 +test.ribowaltz UAU 0 +test.ribowaltz UAC 0 +test.ribowaltz GUA 0 +test.ribowaltz GUG 0 +test.ribowaltz GUU 0 +test.ribowaltz GUC 0 diff --git a/data/ribowaltz/test.ribowaltz.frames.tsv b/data/ribowaltz/test.ribowaltz.frames.tsv new file mode 100644 index 00000000..e48c8d08 --- /dev/null +++ b/data/ribowaltz/test.ribowaltz.frames.tsv @@ -0,0 +1,10 @@ +sample region frame count scaled_count +test.ribowaltz 5' UTR 0 5280 49.139134481154 +test.ribowaltz 5' UTR 1 2926 27.2312703583062 +test.ribowaltz 5' UTR 2 2539 23.6295951605398 +test.ribowaltz CDS 0 55358 61.3086140828848 +test.ribowaltz CDS 1 21343 23.6372294947616 +test.ribowaltz CDS 2 13593 15.0541564223536 +test.ribowaltz 3' UTR 0 4992 27.1643902704468 +test.ribowaltz 3' UTR 1 6263 34.0806442836154 +test.ribowaltz 3' UTR 2 7122 38.7549654459379 diff --git a/data/ribowaltz/test.ribowaltz.frames_stratified.tsv b/data/ribowaltz/test.ribowaltz.frames_stratified.tsv new file mode 100644 index 00000000..a3aba9d1 --- /dev/null +++ b/data/ribowaltz/test.ribowaltz.frames_stratified.tsv @@ -0,0 +1,199 @@ +sample length region frame count scaled_count +test.ribowaltz 20 5' UTR 0 1 2.63157894736842 +test.ribowaltz 20 5' UTR 1 30 78.9473684210526 +test.ribowaltz 20 5' UTR 2 7 18.4210526315789 +test.ribowaltz 20 CDS 0 121 37.1165644171779 +test.ribowaltz 20 CDS 1 108 33.1288343558282 +test.ribowaltz 20 CDS 2 97 29.7546012269939 +test.ribowaltz 20 3' UTR 0 22 28.9473684210526 +test.ribowaltz 20 3' UTR 1 32 42.1052631578947 +test.ribowaltz 20 3' UTR 2 22 28.9473684210526 +test.ribowaltz 21 5' UTR 0 48 38.0952380952381 +test.ribowaltz 21 5' UTR 1 78 61.9047619047619 +test.ribowaltz 21 5' UTR 2 0 0 +test.ribowaltz 21 CDS 0 200 12.1580547112462 +test.ribowaltz 21 CDS 1 1029 62.5531914893617 +test.ribowaltz 21 CDS 2 416 25.2887537993921 +test.ribowaltz 21 3' UTR 0 119 33.7110481586402 +test.ribowaltz 21 3' UTR 1 113 32.0113314447592 +test.ribowaltz 21 3' UTR 2 121 34.2776203966006 +test.ribowaltz 22 5' UTR 0 2382 82.7658095899931 +test.ribowaltz 22 5' UTR 1 97 3.37039610840862 +test.ribowaltz 22 5' UTR 2 399 13.8637943015983 +test.ribowaltz 22 CDS 0 718 60.6418918918919 +test.ribowaltz 22 CDS 1 251 21.1993243243243 +test.ribowaltz 22 CDS 2 215 18.1587837837838 +test.ribowaltz 22 3' UTR 0 65 31.1004784688995 +test.ribowaltz 22 3' UTR 1 61 29.1866028708134 +test.ribowaltz 22 3' UTR 2 83 39.7129186602871 +test.ribowaltz 23 5' UTR 0 460 28.6783042394015 +test.ribowaltz 23 5' UTR 1 429 26.7456359102244 +test.ribowaltz 23 5' UTR 2 715 44.5760598503741 +test.ribowaltz 23 CDS 0 366 25.9023354564756 +test.ribowaltz 23 CDS 1 579 40.9766454352442 +test.ribowaltz 23 CDS 2 468 33.1210191082803 +test.ribowaltz 23 3' UTR 0 82 25.705329153605 +test.ribowaltz 23 3' UTR 1 129 40.4388714733542 +test.ribowaltz 23 3' UTR 2 108 33.8557993730408 +test.ribowaltz 24 5' UTR 0 111 26.1176470588235 +test.ribowaltz 24 5' UTR 1 254 59.7647058823529 +test.ribowaltz 24 5' UTR 2 60 14.1176470588235 +test.ribowaltz 24 CDS 0 1564 34.3358946212953 +test.ribowaltz 24 CDS 1 799 17.5411635565313 +test.ribowaltz 24 CDS 2 2192 48.1229418221734 +test.ribowaltz 24 3' UTR 0 345 34.2601787487587 +test.ribowaltz 24 3' UTR 1 409 40.6156901688183 +test.ribowaltz 24 3' UTR 2 253 25.124131082423 +test.ribowaltz 25 5' UTR 0 311 60.2713178294574 +test.ribowaltz 25 5' UTR 1 74 14.3410852713178 +test.ribowaltz 25 5' UTR 2 131 25.3875968992248 +test.ribowaltz 25 CDS 0 5602 62.4804818202097 +test.ribowaltz 25 CDS 1 1392 15.5253178674994 +test.ribowaltz 25 CDS 2 1972 21.9942003122909 +test.ribowaltz 25 3' UTR 0 468 27.3844353423054 +test.ribowaltz 25 3' UTR 1 522 30.5441778818022 +test.ribowaltz 25 3' UTR 2 719 42.0713867758923 +test.ribowaltz 26 5' UTR 0 355 31.1676909569798 +test.ribowaltz 26 5' UTR 1 531 46.6198419666374 +test.ribowaltz 26 5' UTR 2 253 22.2124670763828 +test.ribowaltz 26 CDS 0 3706 39.7596824375067 +test.ribowaltz 26 CDS 1 3194 34.2667095805171 +test.ribowaltz 26 CDS 2 2421 25.9736079819762 +test.ribowaltz 26 3' UTR 0 642 34.5532831001076 +test.ribowaltz 26 3' UTR 1 582 31.3240043057051 +test.ribowaltz 26 3' UTR 2 634 34.1227125941873 +test.ribowaltz 27 5' UTR 0 729 59.2201462225833 +test.ribowaltz 27 5' UTR 1 270 21.9333874898457 +test.ribowaltz 27 5' UTR 2 232 18.8464662875711 +test.ribowaltz 27 CDS 0 11156 57.4903375418707 +test.ribowaltz 27 CDS 1 6947 35.80005153311 +test.ribowaltz 27 CDS 2 1302 6.70961092501933 +test.ribowaltz 27 3' UTR 0 1051 26.5069356872636 +test.ribowaltz 27 3' UTR 1 1242 31.3240857503153 +test.ribowaltz 27 3' UTR 2 1672 42.1689785624212 +test.ribowaltz 28 5' UTR 0 492 33.9310344827586 +test.ribowaltz 28 5' UTR 1 608 41.9310344827586 +test.ribowaltz 28 5' UTR 2 350 24.1379310344828 +test.ribowaltz 28 CDS 0 25129 85.0677048070413 +test.ribowaltz 28 CDS 1 2962 10.0270819228165 +test.ribowaltz 28 CDS 2 1449 4.90521327014218 +test.ribowaltz 28 3' UTR 0 900 19.1245218869528 +test.ribowaltz 28 3' UTR 1 1634 34.721631959201 +test.ribowaltz 28 3' UTR 2 2172 46.1538461538462 +test.ribowaltz 29 5' UTR 0 303 29.5609756097561 +test.ribowaltz 29 5' UTR 1 438 42.7317073170732 +test.ribowaltz 29 5' UTR 2 284 27.7073170731707 +test.ribowaltz 29 CDS 0 4863 61.9569371894509 +test.ribowaltz 29 CDS 1 1303 16.6008408714486 +test.ribowaltz 29 CDS 2 1683 21.4422219391005 +test.ribowaltz 29 3' UTR 0 553 27.608587119321 +test.ribowaltz 29 3' UTR 1 793 39.5906140788817 +test.ribowaltz 29 3' UTR 2 657 32.8007988017973 +test.ribowaltz 30 5' UTR 0 6 6.18556701030928 +test.ribowaltz 30 5' UTR 1 57 58.7628865979382 +test.ribowaltz 30 5' UTR 2 34 35.0515463917526 +test.ribowaltz 30 CDS 0 1328 40.1572422134865 +test.ribowaltz 30 CDS 1 1421 42.969458723919 +test.ribowaltz 30 CDS 2 558 16.8732990625945 +test.ribowaltz 30 3' UTR 0 352 36.1025641025641 +test.ribowaltz 30 3' UTR 1 280 28.7179487179487 +test.ribowaltz 30 3' UTR 2 343 35.1794871794872 +test.ribowaltz 31 5' UTR 0 10 20.4081632653061 +test.ribowaltz 31 5' UTR 1 24 48.9795918367347 +test.ribowaltz 31 5' UTR 2 15 30.6122448979592 +test.ribowaltz 31 CDS 0 357 23.8476953907816 +test.ribowaltz 31 CDS 1 738 49.2985971943888 +test.ribowaltz 31 CDS 2 402 26.8537074148297 +test.ribowaltz 31 3' UTR 0 161 32.5252525252525 +test.ribowaltz 31 3' UTR 1 212 42.8282828282828 +test.ribowaltz 31 3' UTR 2 122 24.6464646464647 +test.ribowaltz 32 5' UTR 0 31 62 +test.ribowaltz 32 5' UTR 1 7 14 +test.ribowaltz 32 5' UTR 2 12 24 +test.ribowaltz 32 CDS 0 144 27.3764258555133 +test.ribowaltz 32 CDS 1 223 42.3954372623574 +test.ribowaltz 32 CDS 2 159 30.2281368821293 +test.ribowaltz 32 3' UTR 0 103 36.013986013986 +test.ribowaltz 32 3' UTR 1 106 37.0629370629371 +test.ribowaltz 32 3' UTR 2 77 26.9230769230769 +test.ribowaltz 33 5' UTR 0 8 17.7777777777778 +test.ribowaltz 33 5' UTR 1 15 33.3333333333333 +test.ribowaltz 33 5' UTR 2 22 48.8888888888889 +test.ribowaltz 33 CDS 0 41 8.03921568627451 +test.ribowaltz 33 CDS 1 311 60.9803921568628 +test.ribowaltz 33 CDS 2 158 30.9803921568627 +test.ribowaltz 33 3' UTR 0 88 33.0827067669173 +test.ribowaltz 33 3' UTR 1 118 44.3609022556391 +test.ribowaltz 33 3' UTR 2 60 22.5563909774436 +test.ribowaltz 34 5' UTR 0 11 36.6666666666667 +test.ribowaltz 34 5' UTR 1 6 20 +test.ribowaltz 34 5' UTR 2 13 43.3333333333333 +test.ribowaltz 34 CDS 0 13 13.5416666666667 +test.ribowaltz 34 CDS 1 22 22.9166666666667 +test.ribowaltz 34 CDS 2 61 63.5416666666667 +test.ribowaltz 34 3' UTR 0 26 25.2427184466019 +test.ribowaltz 34 3' UTR 1 13 12.621359223301 +test.ribowaltz 34 3' UTR 2 64 62.1359223300971 +test.ribowaltz 35 5' UTR 0 1 50 +test.ribowaltz 35 5' UTR 1 0 0 +test.ribowaltz 35 5' UTR 2 1 50 +test.ribowaltz 35 CDS 0 27 24.5454545454546 +test.ribowaltz 35 CDS 1 57 51.8181818181818 +test.ribowaltz 35 CDS 2 26 23.6363636363636 +test.ribowaltz 35 3' UTR 0 4 26.6666666666667 +test.ribowaltz 35 3' UTR 1 11 73.3333333333333 +test.ribowaltz 35 3' UTR 2 0 0 +test.ribowaltz 36 5' UTR 0 21 52.5 +test.ribowaltz 36 5' UTR 1 8 20 +test.ribowaltz 36 5' UTR 2 11 27.5 +test.ribowaltz 36 CDS 0 23 54.7619047619048 +test.ribowaltz 36 CDS 1 5 11.9047619047619 +test.ribowaltz 36 CDS 2 14 33.3333333333333 +test.ribowaltz 36 3' UTR 0 7 31.8181818181818 +test.ribowaltz 36 3' UTR 1 2 9.09090909090909 +test.ribowaltz 36 3' UTR 2 13 59.0909090909091 +test.ribowaltz 37 5' UTR 0 0 0 +test.ribowaltz 37 5' UTR 1 0 0 +test.ribowaltz 37 5' UTR 2 0 0 +test.ribowaltz 37 CDS 0 0 0 +test.ribowaltz 37 CDS 1 2 100 +test.ribowaltz 37 CDS 2 0 0 +test.ribowaltz 37 3' UTR 0 4 80 +test.ribowaltz 37 3' UTR 1 0 0 +test.ribowaltz 37 3' UTR 2 1 20 +test.ribowaltz 38 5' UTR 0 0 0 +test.ribowaltz 38 5' UTR 1 0 0 +test.ribowaltz 38 5' UTR 2 0 0 +test.ribowaltz 38 CDS 0 0 0 +test.ribowaltz 38 CDS 1 0 0 +test.ribowaltz 38 CDS 2 0 0 +test.ribowaltz 38 3' UTR 0 0 0 +test.ribowaltz 38 3' UTR 1 4 100 +test.ribowaltz 38 3' UTR 2 0 0 +test.ribowaltz 39 5' UTR 0 0 0 +test.ribowaltz 39 5' UTR 1 0 0 +test.ribowaltz 39 5' UTR 2 0 0 +test.ribowaltz 39 CDS 0 0 0 +test.ribowaltz 39 CDS 1 0 0 +test.ribowaltz 39 CDS 2 0 0 +test.ribowaltz 39 3' UTR 0 0 0 +test.ribowaltz 39 3' UTR 1 0 0 +test.ribowaltz 39 3' UTR 2 1 100 +test.ribowaltz 40 5' UTR 0 0 0 +test.ribowaltz 40 5' UTR 1 0 0 +test.ribowaltz 40 5' UTR 2 0 0 +test.ribowaltz 40 CDS 0 0 0 +test.ribowaltz 40 CDS 1 0 0 +test.ribowaltz 40 CDS 2 0 0 +test.ribowaltz 40 3' UTR 0 0 0 +test.ribowaltz 40 3' UTR 1 0 0 +test.ribowaltz 40 3' UTR 2 0 0 +test.ribowaltz 41 5' UTR 0 0 0 +test.ribowaltz 41 5' UTR 1 0 0 +test.ribowaltz 41 5' UTR 2 0 0 +test.ribowaltz 41 CDS 0 0 0 +test.ribowaltz 41 CDS 1 0 0 +test.ribowaltz 41 CDS 2 0 0 +test.ribowaltz 41 3' UTR 0 0 0 +test.ribowaltz 41 3' UTR 1 0 0 +test.ribowaltz 41 3' UTR 2 0 0 diff --git a/data/ribowaltz/test.ribowaltz.length_bins_for_psite.tsv b/data/ribowaltz/test.ribowaltz.length_bins_for_psite.tsv new file mode 100644 index 00000000..c00117f2 --- /dev/null +++ b/data/ribowaltz/test.ribowaltz.length_bins_for_psite.tsv @@ -0,0 +1,45 @@ +sample length count +start_codon 20 26 +start_codon 21 116 +start_codon 22 38 +start_codon 23 83 +start_codon 24 149 +start_codon 25 465 +start_codon 26 808 +start_codon 27 1118 +start_codon 28 1742 +start_codon 29 255 +start_codon 30 57 +start_codon 31 11 +start_codon 32 10 +start_codon 33 6 +start_codon 34 0 +start_codon 35 0 +start_codon 36 0 +start_codon 37 0 +start_codon 38 0 +start_codon 39 0 +start_codon 40 0 +start_codon 41 0 +whole_sample 20 1812 +whole_sample 21 4114 +whole_sample 22 11780 +whole_sample 23 8109 +whole_sample 24 12207 +whole_sample 25 20127 +whole_sample 26 22912 +whole_sample 27 42769 +whole_sample 28 63161 +whole_sample 29 24926 +whole_sample 30 7183 +whole_sample 31 3540 +whole_sample 32 1434 +whole_sample 33 1370 +whole_sample 34 373 +whole_sample 35 264 +whole_sample 36 172 +whole_sample 37 38 +whole_sample 38 7 +whole_sample 39 4 +whole_sample 40 0 +whole_sample 41 3 diff --git a/data/ribowaltz/test.ribowaltz.length_distribution.tsv b/data/ribowaltz/test.ribowaltz.length_distribution.tsv new file mode 100644 index 00000000..bf42af1e --- /dev/null +++ b/data/ribowaltz/test.ribowaltz.length_distribution.tsv @@ -0,0 +1,15 @@ +sample length count +test.ribowaltz 20 1812 +test.ribowaltz 21 4114 +test.ribowaltz 22 11780 +test.ribowaltz 23 8109 +test.ribowaltz 24 12207 +test.ribowaltz 25 20127 +test.ribowaltz 26 22912 +test.ribowaltz 27 42769 +test.ribowaltz 28 63161 +test.ribowaltz 29 24926 +test.ribowaltz 30 7183 +test.ribowaltz 31 3540 +test.ribowaltz 32 1434 +test.ribowaltz 33 1370 diff --git a/data/ribowaltz/test.ribowaltz.metaprofile_psite.tsv b/data/ribowaltz/test.ribowaltz.metaprofile_psite.tsv new file mode 100644 index 00000000..d850c9d4 --- /dev/null +++ b/data/ribowaltz/test.ribowaltz.metaprofile_psite.tsv @@ -0,0 +1,133 @@ +sample region x y +test.ribowaltz Distance from start (nt) -25 0.00555695882798687 +test.ribowaltz Distance from start (nt) -24 0.00340995200808285 +test.ribowaltz Distance from start (nt) -23 0.0146501641828745 +test.ribowaltz Distance from start (nt) -22 0.00391513008335438 +test.ribowaltz Distance from start (nt) -21 0.000884061631725183 +test.ribowaltz Distance from start (nt) -20 0.00265218489517555 +test.ribowaltz Distance from start (nt) -19 0.00101035615054307 +test.ribowaltz Distance from start (nt) -18 0.00328365748926497 +test.ribowaltz Distance from start (nt) -17 0.0015155342258146 +test.ribowaltz Distance from start (nt) -16 0.00138923970699672 +test.ribowaltz Distance from start (nt) -15 0.0007577671129073 +test.ribowaltz Distance from start (nt) -14 0.000126294518817883 +test.ribowaltz Distance from start (nt) -13 0.00252589037635767 +test.ribowaltz Distance from start (nt) -12 0.00277847941399343 +test.ribowaltz Distance from start (nt) -11 0.00252589037635767 +test.ribowaltz Distance from start (nt) -10 0.0007577671129073 +test.ribowaltz Distance from start (nt) -9 0.00479919171507957 +test.ribowaltz Distance from start (nt) -8 0.000252589037635767 +test.ribowaltz Distance from start (nt) -7 0.00568325334680475 +test.ribowaltz Distance from start (nt) -6 0.000126294518817883 +test.ribowaltz Distance from start (nt) -5 0.00164182874463248 +test.ribowaltz Distance from start (nt) -4 0.0135135135135135 +test.ribowaltz Distance from start (nt) -3 0.00404142460217227 +test.ribowaltz Distance from start (nt) -2 0.00189441778226825 +test.ribowaltz Distance from start (nt) -1 0.00884061631725183 +test.ribowaltz Distance from start (nt) 0 0.269512503157363 +test.ribowaltz Distance from start (nt) 1 0.0423086638039909 +test.ribowaltz Distance from start (nt) 2 0.00694619853498358 +test.ribowaltz Distance from start (nt) 3 0.0228593079060369 +test.ribowaltz Distance from start (nt) 4 0.00618843142207628 +test.ribowaltz Distance from start (nt) 5 0.00479919171507957 +test.ribowaltz Distance from start (nt) 6 0.0178075271533215 +test.ribowaltz Distance from start (nt) 7 0.00593584238444052 +test.ribowaltz Distance from start (nt) 8 0.0178075271533215 +test.ribowaltz Distance from start (nt) 9 0.0122505683253347 +test.ribowaltz Distance from start (nt) 10 0.00391513008335438 +test.ribowaltz Distance from start (nt) 11 0 +test.ribowaltz Distance from start (nt) 12 0.00429401363980803 +test.ribowaltz Distance from start (nt) 13 0.00202071230108613 +test.ribowaltz Distance from start (nt) 14 0.00290477393281132 +test.ribowaltz Distance from start (nt) 15 0.00921949987370548 +test.ribowaltz Distance from start (nt) 16 0.0015155342258146 +test.ribowaltz Distance from start (nt) 17 0.00290477393281132 +test.ribowaltz Distance from start (nt) 18 0.00202071230108613 +test.ribowaltz Distance from start (nt) 19 0.00214700681990402 +test.ribowaltz Distance from start (nt) 20 0.00328365748926497 +test.ribowaltz Distance from start (nt) 21 0.0007577671129073 +test.ribowaltz Distance from start (nt) 22 0.00265218489517555 +test.ribowaltz Distance from start (nt) 23 0.00202071230108613 +test.ribowaltz Distance from start (nt) 24 0.00429401363980803 +test.ribowaltz Distance from start (nt) 25 0.00442030815862592 +test.ribowaltz Distance from start (nt) 26 0.000252589037635767 +test.ribowaltz Distance from start (nt) 27 0.00745137661025511 +test.ribowaltz Distance from start (nt) 28 0.00719878757261935 +test.ribowaltz Distance from start (nt) 29 0.00277847941399343 +test.ribowaltz Distance from start (nt) 30 0.00719878757261935 +test.ribowaltz Distance from start (nt) 31 0.0045466026774438 +test.ribowaltz Distance from start (nt) 32 0.0053043697903511 +test.ribowaltz Distance from start (nt) 33 0.00972467794897701 +test.ribowaltz Distance from start (nt) 34 0.0128820409194241 +test.ribowaltz Distance from start (nt) 35 0.0037888355645365 +test.ribowaltz Distance from start (nt) 36 0.00694619853498358 +test.ribowaltz Distance from start (nt) 37 0.0022733013387219 +test.ribowaltz Distance from start (nt) 38 0.00429401363980803 +test.ribowaltz Distance from start (nt) 39 0.00416771912099015 +test.ribowaltz Distance from start (nt) 40 0.00366254104571862 +test.ribowaltz Distance from stop (nt) -40 0.00479919171507957 +test.ribowaltz Distance from stop (nt) -39 0.0135135135135135 +test.ribowaltz Distance from stop (nt) -38 0.0275322051022986 +test.ribowaltz Distance from stop (nt) -37 0.00277847941399343 +test.ribowaltz Distance from stop (nt) -36 0.00176812326345037 +test.ribowaltz Distance from stop (nt) -35 0.0170497600404142 +test.ribowaltz Distance from stop (nt) -34 0.00555695882798687 +test.ribowaltz Distance from stop (nt) -33 0.0007577671129073 +test.ribowaltz Distance from stop (nt) -32 0.00505178075271533 +test.ribowaltz Distance from stop (nt) -31 0.00543066430916898 +test.ribowaltz Distance from stop (nt) -30 0.00315736297044708 +test.ribowaltz Distance from stop (nt) -29 0.0123768628441526 +test.ribowaltz Distance from stop (nt) -28 0.00593584238444052 +test.ribowaltz Distance from stop (nt) -27 0.00126294518817883 +test.ribowaltz Distance from stop (nt) -26 0.00669360949734782 +test.ribowaltz Distance from stop (nt) -25 0.00290477393281132 +test.ribowaltz Distance from stop (nt) -24 0.00126294518817883 +test.ribowaltz Distance from stop (nt) -23 0.0123768628441526 +test.ribowaltz Distance from stop (nt) -22 0.00770396564789088 +test.ribowaltz Distance from stop (nt) -21 0.0022733013387219 +test.ribowaltz Distance from stop (nt) -20 0.0112402121747916 +test.ribowaltz Distance from stop (nt) -19 0.00580954786562263 +test.ribowaltz Distance from stop (nt) -18 0.00543066430916898 +test.ribowaltz Distance from stop (nt) -17 0.0083354382419803 +test.ribowaltz Distance from stop (nt) -16 0.0007577671129073 +test.ribowaltz Distance from stop (nt) -15 0.00656731497852993 +test.ribowaltz Distance from stop (nt) -14 0.0377620611265471 +test.ribowaltz Distance from stop (nt) -13 0.00770396564789088 +test.ribowaltz Distance from stop (nt) -12 0.00353624652690073 +test.ribowaltz Distance from stop (nt) -11 0.0149027532205102 +test.ribowaltz Distance from stop (nt) -10 0.00366254104571862 +test.ribowaltz Distance from stop (nt) -9 0.00239959585753978 +test.ribowaltz Distance from stop (nt) -8 0.0221015407931296 +test.ribowaltz Distance from stop (nt) -7 0.00176812326345037 +test.ribowaltz Distance from stop (nt) -6 0.0146501641828745 +test.ribowaltz Distance from stop (nt) -5 0.00429401363980803 +test.ribowaltz Distance from stop (nt) -4 0.00492548623389745 +test.ribowaltz Distance from stop (nt) -3 0.01730234907805 +test.ribowaltz Distance from stop (nt) -2 0 +test.ribowaltz Distance from stop (nt) -1 0.00037888355645365 +test.ribowaltz Distance from stop (nt) 0 0 +test.ribowaltz Distance from stop (nt) 1 0.00202071230108613 +test.ribowaltz Distance from stop (nt) 2 0.00164182874463248 +test.ribowaltz Distance from stop (nt) 3 0.00037888355645365 +test.ribowaltz Distance from stop (nt) 4 0.000126294518817883 +test.ribowaltz Distance from stop (nt) 5 0.00202071230108613 +test.ribowaltz Distance from stop (nt) 6 0.00315736297044708 +test.ribowaltz Distance from stop (nt) 7 0.0015155342258146 +test.ribowaltz Distance from stop (nt) 8 0 +test.ribowaltz Distance from stop (nt) 9 0.00202071230108613 +test.ribowaltz Distance from stop (nt) 10 0.00202071230108613 +test.ribowaltz Distance from stop (nt) 11 0.00101035615054307 +test.ribowaltz Distance from stop (nt) 12 0.00189441778226825 +test.ribowaltz Distance from stop (nt) 13 0.00126294518817883 +test.ribowaltz Distance from stop (nt) 14 0.00820914372316241 +test.ribowaltz Distance from stop (nt) 15 0.00442030815862592 +test.ribowaltz Distance from stop (nt) 16 0.00694619853498358 +test.ribowaltz Distance from stop (nt) 17 0.00189441778226825 +test.ribowaltz Distance from stop (nt) 18 0.00404142460217227 +test.ribowaltz Distance from stop (nt) 19 0.00328365748926497 +test.ribowaltz Distance from stop (nt) 20 0.00277847941399343 +test.ribowaltz Distance from stop (nt) 21 0.00202071230108613 +test.ribowaltz Distance from stop (nt) 22 0.00479919171507957 +test.ribowaltz Distance from stop (nt) 23 0.00101035615054307 +test.ribowaltz Distance from stop (nt) 24 0.00176812326345037 +test.ribowaltz Distance from stop (nt) 25 0.000252589037635767 diff --git a/data/ribowaltz/test.ribowaltz.psite_region.tsv b/data/ribowaltz/test.ribowaltz.psite_region.tsv new file mode 100644 index 00000000..b21a117b --- /dev/null +++ b/data/ribowaltz/test.ribowaltz.psite_region.tsv @@ -0,0 +1,7 @@ +sample region count scaled_count +test.ribowaltz 5' UTR 10745 8.99795672271722 +test.ribowaltz CDS 90294 75.6129831848329 +test.ribowaltz 3' UTR 18377 15.3890600924499 +RNAs 5' UTR 408772 7.66235492217247 +RNAs CDS 2467212 46.2474289145122 +RNAs 3' UTR 2458825 46.0902161633153